Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0381 ATGGAGGTCGATGCTAATTCAGGGAAGTCGTCCAAACAGATTGGGGGCGGCCAGGTGTGTCAGATCTGCAGCGATTCCGTCGGCAAGACGGCCGACGGCGAGCCTTTTGTTGCGTGCGACGTTTGTGCATTTCCGGTTTGCCGTCCGTGTTACGAGTATGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCACAAAGGAAGTCCTCCGGTTAATGGAGAAGCTGTGGAAGATGGTAATGGTAATGGAGTAGCAGAGGGTCAAGAAAGACACCATAAGGTACCAGAGCGCACGCTCAGCTGGGATACAAATTATGATAAGGAGGGATCTTTTAACCATATTCCTTTGCTTACCACTGGACGATCTGTTTCTGGAGAGCTCTCTGCTGCATCTCCGGAGCGGCTATCCATGGCATCTCCTGAAAGTGGGAGCAGGGGTAAACTCATTCATTTGATATCTTTGACTAACTATAGAATCATCGATCAATCGAGAGATTCGGGATCGGCTAGGTTTGGCAATGTGGCCTGGAAAGAGAGAATAGATAGTTGGAAGGTGAAGCAGGACAAGAGTGTGCCACCAATGAGTGTCAGTCATGCTCCTTCTGAAGGTAGGGGTGGTGCAGATTTTGACGCCAGCACTGATGTCATTATCGATGATTCTTTACTAAATGACGAAGCCCGCCAGCCTCTATCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAACCCTTATAGGATGGTCATAGTTCTGCGGCTTGTTATTCTTGTCATCTTCCTGCACTACCGTATAACAAATCCAGTTCCCAATGCCTTTGCTCTGTGGTTGATATCAGTGATTTGTGAGATATGGTTTGCTGTATCTTGGATTTTGGATCAGTTCCCCAAATGGCTCCCTGTAAATCGTGAGACATATCTTGATAGGCTTGCTCTACGATATGACCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTTGACATTTTTGTCAGTACTGTCGACCCTCTGAAAGAACCTCCCCTTGTCACAGCCAATACAGTCCTATCAATTCTCGCCGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTCTCAGATGATGGAGCTGCTATGTTAACATTTGAAGCCCTGTCTGAAACATCAGAATTTGCCAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTCCATCCATCATTTGTGAAGGAGCGGCGAGCAATGAAGAGAGAATACGAGGAGTTTAAAATTCGTGTCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGGTGGGTCATGCAAGATGGTACACCATGGCCTGGAAATAACACTAGAGATCATCCAGGAATGATACAGGTTTTCTTAGGGCACAGTGGAGGACTCGATACTGAGGGTAATGAGCTTCCACGTTTAGTGTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAGAAGGCTGGTGCTATGAATGCACTTGTGCGCGTTTCTGCTGTTCTTACCAATGGACCCTTCTTGTTGAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCATTGCGGGAATCTATGTGTTTTCTGATGGATCCTAATCTTGGAAAATCAGTTTGCTATGTTCAGTTTCCTCAGAGATTTGATGGGATTGATAGAAATGATCGATATGCCAACCGTAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGCATCCAAGGTCCGGTTTATGTGGGAACAGGATGTGTTTTCAACCGAACTGCATTGTATGGCTATGAACCCCCACTCAAGCCCAAGCATAAAAAACCAGGGCTATTCTCCTCTTGCTTCGGGAAATCAAGAAAGAAAAGTTCCAAGTCGAAAAGAAAGGACTCTGATAAGAAGCAATCAAGTAAAAATGTTGATCCCACTGTGCCAATATTCAACCTCGAGGATATTGAGGAAGGAGTTGAAGGTGCTGGGTTTGATGATGAGAAGTCGCTACTAATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAGAATGGCGGTGTGCCGCAGTCTGCAACTCCGGAATCTCTCCTTAAAGAAGCAATACATGTCATCAGTTGCGGGTACGAGGACAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCACGCCCGTGGTTGGAGATCAATCTATTGCATACCAGACCGCCCTGCATTTAAAGGATCTGCTCCTATTAATCTTTCTGATCGTCTAAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGCCCTATGTGGTATGGTTATGGCGGACGGTTGAAATGGCTCGAGAGATTTGCTTACGTTAACACCACCATTTACCCAATAACATCCATTCCTCTTCTTGCCTATTGTACCTTGCCTGCAATATGTCTGCTCACGGGAAAGTTCATCATTCCTCAGATAAGCAATCTTGCCAGCATCTGGTTCATTTCTCTCTTTCTTTCCATCTTTGCCACTGGTATTCTGGAAATGAGATGGAGTGGTGTCGGAATCGATGAATGGTGGAGAAACGAGCAGTTCTGGGTTATTGGAGGTGTGTCAGCCCATCTGTTTGCCGTCTTCCAAGGTCTCCTTAAAGTTCTTGCAGGAATTGATACCAACTTTACCGTTACCTCGAAAGCATCTGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTCCTCATTCCCCCAACCACTCTCCTTATCATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATTAACAGTGGCTATCAATCTTGGGGTCCCCTTTTCGGAAAACTGTTCTTCGCTTTCTGGGTGATTATTCATCTTTATCCCTTCCTCAAGGGTCTGATGGGTCGCCAGAACCGAACTCCCACGATCGTGGTTGTGTGGTCCATCCTTCTCGCCTCAATCTTCTCCCTTTTATGGGTTCGAATCGATCCCTTCACAACCCGGGTAACTGGCCCTGATGTCGAACAATGTGGAATCAACTGCTAA 3180 45.6 MEVDANSGKSSKQIGGGQVCQICSDSVGKTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGNGNGVAEGQERHHKVPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRGKLIHLISLTNYRIIDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVIIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILVIFLHYRITNPVPNAFALWLISVICEIWFAVSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKERRAMKREYEEFKIRVNGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALRESMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSRKKSSKSKRKDSDKKQSSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7864017 7873286 + MC01g0171 Mch1g0381 675273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0381 1059 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 449 622 IPR029044 -
Mch1g0381 1059 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Mch1g0381 1059 Pfam Cellulose synthase 331 1052 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Mch1g0381 1059 SUPERFAMILY RING/U-box 8 88 - -
Mch1g0381 1059 FunFam Cellulose synthase 448 622 - -
Mch1g0381 1059 Pfam Zinc-binding RING-finger 16 85 IPR027934 -
Mch1g0381 1059 CDD mRING-HC-C4C4_CesA 18 68 - -
Mch1g0381 1059 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 861 IPR029044 -
Mch1g0381 1059 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 239 1028 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Mch1g0381 1059 MobiDBLite consensus disorder prediction 632 665 - -
Mch1g0381 1059 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0381 Mch-Chr1:7864017 Mch9g0557 Mch-Chr9:4059083 0 dispersed
Mch1g0381 Mch-Chr1:7864017 Mch5g0065 Mch-Chr5:443226 6.00E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0381 K10999 - csv:101211779 2067.35