Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0384 ATGGGAACTCCGGAATTCCCTAATCTCGGGAAGCACTGCTACGTCGAAGATTGCAAGCAGATCGATTTCTTGCCCTTCACTTGCGATTGCTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGCTATAATACGCATAGTTGTCCGAAAGCTGATAAACGAGATGTCACAGTTGTCATTTGCCCGCTCTGTGCCAAAGGAGTTCGTCTCATTCCTGATCAAGACCCAAATATTACTTGGGAGTCACATGTTAACACCGAATGTGACCCATCAAATTATGATAAAGTCACAAAGAAGAAAAAGTGCCCCGTACCCGGCTGCAGGGAGTTGTTGACGTTCTCAAACACAATCAAGTGCCGGGATTGCTTGGTGGACCATTGTTTGAAGCACCGTTTTGGACGCGACCATAAATGTCCTGGACCCAAGAAACCAGAACCAGCAGGTTTTCGATTCATTGGTCTTTTAGGTAGTAGAAAAGAGGAGAAAGGGCCTAACAAACCATTGCCCACATCTTCCTCTAGGTGGGCTACGACCATTCGTAATGCAGCCTCAAGCATGACGAAGTTGTCAAATGACATCAGTCAAGCTTGGAAAACATCGGGAGGCAGCAGCAGCAGCGGAACTGGGAATGGACAGGTTGAGCAATGTCCACAATGCAGTGCTAAGTTTTCATCGGTCTCATCGTTAATAGAGCATGTGGAGAAAGTCCATGAAAGGGGTGGCAACCGACCGGGGGTGAAGAAGGTAGTAATTGACGCTTGTCCAAAGTGTAGTAGAGGATTTATTGATCCTGTAGCCCTTGTGGAGCATATTGAGAGGGATCATGGTGGTACTTCAAGAGCTTGA 843 47.09 MGTPEFPNLGKHCYVEDCKQIDFLPFTCDCCHQVFCLEHRSYNTHSCPKADKRDVTVVICPLCAKGVRLIPDQDPNITWESHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCLVDHCLKHRFGRDHKCPGPKKPEPAGFRFIGLLGSRKEEKGPNKPLPTSSSRWATTIRNAASSMTKLSNDISQAWKTSGGSSSSGTGNGQVEQCPQCSAKFSSVSSLIEHVEKVHERGGNRPGVKKVVIDACPKCSRGFIDPVALVEHIERDHGGTSRA 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7882326 7884725 + MC01g0174 Mch1g0384 675276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0384 280 SMART c2h2final6 99 129 IPR013087 -
Mch1g0384 280 SMART c2h2final6 213 236 IPR013087 -
Mch1g0384 280 SMART c2h2final6 251 274 IPR013087 -
Mch1g0384 280 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 239 - GO:0005737(PANTHER)
Mch1g0384 280 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270(InterPro)
Mch1g0384 280 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270(InterPro)
Mch1g0384 280 Pfam AN1-like Zinc finger 101 142 IPR000058 GO:0008270(InterPro)
Mch1g0384 280 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270(InterPro)
Mch1g0384 280 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270(InterPro)
Mch1g0384 280 ProSitePatterns Zinc finger C2H2 type domain signature. 215 236 IPR013087 -
Mch1g0384 280 Gene3D Classic Zinc Finger 179 279 - -
Mch1g0384 280 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Mch1g0384 280 SUPERFAMILY AN1-like Zinc finger 6 51 IPR035896 -
Mch1g0384 280 Gene3D - 80 148 IPR035896 -
Mch1g0384 280 ProSitePatterns Zinc finger C2H2 type domain signature. 253 274 IPR013087 -
Mch1g0384 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 236 IPR013087 -
Mch1g0384 280 Gene3D - 2 58 IPR035896 -
Mch1g0384 280 Pfam C2H2-type zinc finger 214 236 - -
Mch1g0384 280 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0384 Mch-Chr1:7882326 Mch8g1569 Mch-Chr8:12495236 3.21E-45 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42666 PF01428 zf-AN1 1.10E-07 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0384 - - - 0.0