Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0387 ATGGCCTTTCTGTGTTATGTCTCCATTTTACTTGTTTTTGGGGTTCTCTCAAATTTCCAATCTGTGGGAGCTGAGGTTGATGATCAGATTACCATGTCTGCCATTAGAGAGGAGCTTCAAGTTCCTGGGTGGAGCTCTAACATCTCTGATTACTGTTCTTGGAAAGGTGTACACTGTGGTTTGAATCATTCCTTGGTTGAAACTCTTGATCTTTCTGGTCATTCTCTTAGAGGTAATCTTTCTCTGATTTCTGAGCTCAAAGCCTTGAAATGGCTTGACCTCTCCTACAATGACTTCCATGGCGAAATCCCGTCGAGCTTTGAGAAGTTATCAGAGCTCGAGTTTCTTGATTTGTCTCTGAACAAGTTTGAAGGCCTGATCCCTCCTCAGTTTGGTGGTCTCAAGAGCCTCAAATCATTGAATCTTTCCAATAATATTCTAGTGGGAGAAGTTCCAAATGAGCTTCAGGGGTTAGAGAAGTTGGAGGGTTTTCAAATTTCTAGTAACAGATTGAATGGTTCAATTCCAAGTTGGGTTGGAAATTTGACTCATCTGAGAGTTTTTACAGCCTATGAGAATGACTTTGGGGGTGTGATTCCTGATAATCTCGGCTCGGTTTCTGCACTCCAAGTGTTGAATCTTCATACCAACAAGCTCGAAGGCTCAATTCCCCGAAGCATTTTTGCTTTGGGGAAGCTAGAGATTTTGGTTCTGACACAGAACAGATTGACTGGGAATCTTCCTGAAGAGATTGGTAACTGCAAGAGCCTTACCAGCGTTCGGATCGGGAACAACAATCTTGTTGGTGTGATTCCTCAGGCCATTGGAAATGTTAGTAGCCTTGCCTACTTTGAAGTGGATAATAATCACCTTTCGGGCGATATAGCGTCGCAGTTTTCTCGGTGCTCTAATCTTACTCTGCTGAATCTAGCGTCAAATGGATTCACCGGGACAATTCCTCCTGAGCTTGGAGAACTGATGAATCTGCAGGAGCTTATTCTTTCAGGCAACAGCCTCTACGGTGATATCCCGAGATCGATGCTCGGGTGCAAGAACCTTAACAAGCTTGATTTAAGCAGCAATAGATTCAATGGTACTATTCCATCAGATATCTGCAATATATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATTAAAGGAGACATACCTAATGAGATTGGAAAATGTACAAAACTTCTTGACCTGAGACTCGGTAGTAACTACCTAACTGGAAACGTCCCTCCCGAGATCGGTCACATTAAGAACTTACAGATAGCTTTGAACTTGAGCTCCAACCATCTAAATGGACCAGTGCCTCCAGAGTTGGGGAAACTTGACAAACTGGTTTCTTTAGATTTATCAAACAATCATCTCTCGGGCGATATCCCATCCGAACTAAAGGGAATGTTAAGCCTCATAGAGGTGAATTTTTCAAATAATCTGCTTACTGGTTCGATACCGTCCTTTGTTCCATTCCAGAAAAGTGCAAACTCCAGTTTTCTGGGGAACGATGGCCTTTGTGGGGCGCCCCTAAGCATCTTGTGTAGAAATACAATCGGTTCATACAGTCAAGATTACCATCACAAGGTCTCATACAAGATCATCCTGGCTGTTATTGGTTCCGGGTTAGCAGTTTTCATATCGGTCACTATAGTTGTTCTTCTTTTTGTGATGAAAGAAAAGCAGGAAAAGGCAGCAAAATCATCCTGCACTACTGCAGATGATGCAACTATCAACGATCAGCCTACGATAATAGCAGGAAACGTCTTCGATGACAACCTCCGACAGGAAATAGATCTCGACGTGGTTGTCAAAGCAACATTGAAGGATTCAAACAAGCTCATATTTGGCACTTTCAGTACCGTTTACAAGGTGGTAATGCCTTCTGGTATGATCGTATCGGTTAAGAGACTAAAATCCATGGACAAGACCATCATTCACCATCAAAGCAAGATGATCAGAGAGCTTGAAAGGCTTGGAAAACTAAGCCATGCCAATCTTTTGCAGCTCATTGGCTATGTAATATATGAAGATGTGGCTCTCTTGCTTCATAATTACTTACCCAATGGGACATTGGCTCAGCTTCTTCATGAGTCCACAAAAAAAGCTGAATATCAACCTGATTGGCCCACAAGATTCTCAATTGCCATTGGAGCAGCAGAAGGGCTGGCTTTTCTTCATCATGTGGCCATAATTCATCTTGATATTTCATCTTCTAATGTTCTTTTGGATGCCAATTTCAAGCCTTTGGTTGGAGAGGTTGAGATCTCAAAGCTTTTGGACCCATCTAGAGGCACTGCAAGTATCAGTGCAGTTGCTGGTTCATTTGGCTACATTCCACCAGAATATGCATACACAATGCAAGTTACAGCCCCAGGAAACGTTTATAGCTATGGTGTCGTCTTGCTTGAGATCCTCACTACTAGACTGCCTGTTGATGAGGAGTTTGGGGAAGGAGTAGACTTGGTGAAGTGGGTGCATAGTGCTCCCTCGAGAGGAGAAACACCGGAGCAGATACTCGATTCCCGGCTGAGCACGGTGTCGTTTGCCTGGAGGAAAGAGATGCTTGCAGCTCTCAAGATTGCATTGCTCTGCACTGATAGCATACCAGCCAAAAGGCCAAAAATGAAGAAGGTGGTGGAAATGCTTATGGAGATCAAGCAACATTGA 2676 43.2 MAFLCYVSILLVFGVLSNFQSVGAEVDDQITMSAIREELQVPGWSSNISDYCSWKGVHCGLNHSLVETLDLSGHSLRGNLSLISELKALKWLDLSYNDFHGEIPSSFEKLSELEFLDLSLNKFEGLIPPQFGGLKSLKSLNLSNNILVGEVPNELQGLEKLEGFQISSNRLNGSIPSWVGNLTHLRVFTAYENDFGGVIPDNLGSVSALQVLNLHTNKLEGSIPRSIFALGKLEILVLTQNRLTGNLPEEIGNCKSLTSVRIGNNNLVGVIPQAIGNVSSLAYFEVDNNHLSGDIASQFSRCSNLTLLNLASNGFTGTIPPELGELMNLQELILSGNSLYGDIPRSMLGCKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGDIPNEIGKCTKLLDLRLGSNYLTGNVPPEIGHIKNLQIALNLSSNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPSFVPFQKSANSSFLGNDGLCGAPLSILCRNTIGSYSQDYHHKVSYKIILAVIGSGLAVFISVTIVVLLFVMKEKQEKAAKSSCTTADDATINDQPTIIAGNVFDDNLRQEIDLDVVVKATLKDSNKLIFGTFSTVYKVVMPSGMIVSVKRLKSMDKTIIHHQSKMIRELERLGKLSHANLLQLIGYVIYEDVALLLHNYLPNGTLAQLLHESTKKAEYQPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEEFGEGVDLVKWVHSAPSRGETPEQILDSRLSTVSFAWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLMEIKQH 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7895113 7899614 - MC01g0177 Mch1g0387 675279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0387 891 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515(InterPro)
Mch1g0387 891 Pfam Leucine rich repeat 256 314 IPR001611 GO:0005515(InterPro)
Mch1g0387 891 Pfam Leucine rich repeat 88 145 IPR001611 GO:0005515(InterPro)
Mch1g0387 891 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 689 891 - -
Mch1g0387 891 Pfam Leucine Rich Repeat 209 228 IPR001611 GO:0005515(InterPro)
Mch1g0387 891 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Mch1g0387 891 Pfam Leucine Rich Repeat 429 447 IPR001611 GO:0005515(InterPro)
Mch1g0387 891 Pfam Leucine Rich Repeat 232 254 IPR001611 GO:0005515(InterPro)
Mch1g0387 891 PANTHER RECEPTOR-LIKE PROTEIN 55 63 176 - -
Mch1g0387 891 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 228 521 - -
Mch1g0387 891 FunFam Nuclear pore complex protein NUP107 31 177 - -
Mch1g0387 891 SMART LRR_typ_2 206 230 IPR003591 -
Mch1g0387 891 SMART LRR_typ_2 134 157 IPR003591 -
Mch1g0387 891 SMART LRR_typ_2 447 470 IPR003591 -
Mch1g0387 891 SMART LRR_typ_2 86 109 IPR003591 -
Mch1g0387 891 SMART LRR_typ_2 374 398 IPR003591 -
Mch1g0387 891 SMART LRR_typ_2 110 133 IPR003591 -
Mch1g0387 891 SMART LRR_typ_2 326 350 IPR003591 -
Mch1g0387 891 Gene3D Ribonuclease Inhibitor 29 134 IPR032675 -
Mch1g0387 891 Gene3D Ribonuclease Inhibitor 233 520 IPR032675 -
Mch1g0387 891 Gene3D Ribonuclease Inhibitor 152 232 IPR032675 -
Mch1g0387 891 Pfam Protein tyrosine and serine/threonine kinase 614 884 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0387 891 ProSiteProfiles Protein kinase domain profile. 610 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0387 891 Gene3D Transferase(Phosphotransferase) domain 1 689 891 - -
Mch1g0387 891 CDD STKc_IRAK 619 888 - -
Mch1g0387 891 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 580 688 - -
Mch1g0387 891 SUPERFAMILY Protein kinase-like (PK-like) 611 887 IPR011009 -
Mch1g0387 891 ProSitePatterns Tyrosine protein kinases specific active-site signature. 733 745 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0387 891 SUPERFAMILY L domain-like 287 515 - -
Mch1g0387 891 SUPERFAMILY L domain-like 29 344 - -
Mch1g0387 891 Gene3D Phosphorylase Kinase; domain 1 575 688 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1535 Mch-Chr11:12639130 Mch1g0387 Mch-Chr1:7895113 3.12E-59 dispersed
Mch1g0387 Mch-Chr1:7895113 Mch7g0889 Mch-Chr7:13444948 2.08E-61 dispersed
Mch1g0387 Mch-Chr1:7895113 Mch5g0162 Mch-Chr5:1041522 1.33E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77099 PF00069 Pkinase 2.90E-27 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0387 - - - 0.0