Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0470 ATGGCTTCAAGACCAGTTGTTCCACAACAAATCAGAGGTGAGGCGGTGGTAGGCGGAGGGAAGCAGGCGAAGGGCGGGGCAGCGAACCGCCGAGCATTGGGCGATATCGGAAACCTGGTAACTGTTCGAGGAATTGATGCAAAGGTGAATCGCCCAATTACAAGGAGCTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCGGCTGCAAAAGCAGAAAACAACAAGAAGCAAGTGCCTGTGACTGTAGATGGGGCCGCTCCCATACTTGATGCTGGTGTTGCAGCAGCTAACAAGAAAGTAGCTCTACCCAAGCAAGCACAGAAGAAGGCAGTAGTTGTTAAACCGAAACCCGAAGTAATCGAGATAAGCCCAGATAGCGTGAAGGAGGATCGGGGCAAGGAAGAAAAATGTGGAAACAAGAAAAAGGACGGAGAAGGAGCCTCAAAGAAAAATACTCAGACTCTCACTTCAGTCCTAACTGCTAGAAGCAAGGCTGCTTGTGGCATAGCCAAGAAACCAAAAGAGCAGATTCTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCTGCAGCTGAATATGTTGAGGACATTTACAAGTTCTATAAGGAAGTTGAGAATGAGAATAGGCCTCATGATTATATGGATTCACAACCTGATATAAATAGTTCAATGAGGGCTATTTTGGTTGATTGGTTGGTTGATGTGCACAACAAGTTCGAGCTTTCACCTGAGACTTTCTACCTCACTATTAACATAATCGACCGATTCCTTGCGGCAAAGCTCGTTGCAAGGGGGGAATTGCAGTTGGTGGGTATTGGTGCCATGCTCATCGCCTCCAAATACGAAGAAATCTGGGCGCCAGAGGTAAATGACTTTGTGTGCCTTTCGGATAGAGCTTACACTCATAAACAGATCCTAGTGATGGAGAAAAAGATACTTGGCAAGTTGGAATGGACCTTTACTGTCCCTACACCATACGTTTTTCTGGCTCGATTCATCAAGGCGTCGAAAGACTCCGATCATGAGATGGAAAATCTGGTGTATTTTCTGGCCGAACTTGGCATAATGCATTACAACACCGGAATAACGTACTGCCCGTCCATGATTGCCGCCTCGGCAGTCTACGCCGCCCGGTGCACGCTGAAGAAAACCCCGGCTTGGGATGGAACCCTCAAACTACACACTGGTTTCTCAGAGCCTCAGATAATTGATTGTGCCAAGCTTTTGGTGGGCTACCATGGAGTAGCAGGCAAGAGCAAGCTTCAAGTTATATATCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTGGCGTTGCTTCAACCAGCAAAAGATCTGTTGGCTGTTAATGGTTCTTCTTTCCAGTGA 1368 47.59 MASRPVVPQQIRGEAVVGGGKQAKGGAANRRALGDIGNLVTVRGIDAKVNRPITRSFCAQLLANAQAAAKAENNKKQVPVTVDGAAPILDAGVAAANKKVALPKQAQKKAVVVKPKPEVIEISPDSVKEDRGKEEKCGNKKKDGEGASKKNTQTLTSVLTARSKAACGIAKKPKEQILDIDAADVGNELAAAEYVEDIYKFYKEVENENRPHDYMDSQPDINSSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLAAKLVARGELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHKQILVMEKKILGKLEWTFTVPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTGITYCPSMIAASAVYAARCTLKKTPAWDGTLKLHTGFSEPQIIDCAKLLVGYHGVAGKSKLQVIYRKYSSSERGAVALLQPAKDLLAVNGSSFQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9148953 9151390 + MC01g0242 Mch1g0470 675362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0470 455 CDD CYCLIN_AtCycB-like_rpt2 324 442 - -
Mch1g0470 455 CDD CYCLIN_AtCycB-like_rpt1 174 319 - -
Mch1g0470 455 Gene3D - 197 438 - -
Mch1g0470 455 Pfam Cyclin, N-terminal domain 197 320 IPR006671 -
Mch1g0470 455 MobiDBLite consensus disorder prediction 123 148 - -
Mch1g0470 455 ProSitePatterns Cyclins signature. 226 257 IPR048258 -
Mch1g0470 455 SMART cyclin_7 231 315 IPR013763 -
Mch1g0470 455 SMART cyclin_7 328 412 IPR013763 -
Mch1g0470 455 SUPERFAMILY Cyclin-like 323 444 IPR036915 -
Mch1g0470 455 Gene3D - 211 322 - -
Mch1g0470 455 SUPERFAMILY Cyclin-like 186 320 IPR036915 -
Mch1g0470 455 SMART Cyclin_C_2 324 443 IPR004367 -
Mch1g0470 455 FunFam G2/mitotic-specific cyclin-1 312 438 - -
Mch1g0470 455 Pfam Cyclin, C-terminal domain 324 442 IPR004367 -
Mch1g0470 455 PANTHER CYCLINS 172 430 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch1g0470 455 PIRSF Cyclin_A_B_D_E 2 454 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Mch1g0470 455 MobiDBLite consensus disorder prediction 123 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0470 K21777 - - csv:101217210 719.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0470 Mch-Chr1:9148953 Mch2g0203 Mch-Chr2:1533033 7.32E-133 dispersed
Mch1g0470 Mch-Chr1:9148953 Mch11g0059 Mch-Chr11:387350 2.19E-81 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1849 . 1 295 Core Cell Cycle Gene Families AT3G48750 86.4 5.1e-152 533.9
Mch1g0587 . 1 312 Core Cell Cycle Gene Families AT3G48750 54.3 5.3e-93 337.8
Mch11g0029 . 11 315 Core Cell Cycle Gene Families AT3G48750 52.3 4.5e-92 334.7
Mch1g0587 . 1 318 Core Cell Cycle Gene Families AT3G54180 81.1 1.7e-150 528.9
Mch11g0029 . 11 318 Core Cell Cycle Gene Families AT3G54180 65.1 5.6e-117 417.5
Mch9g1849 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.4 1.3e-92 336.7
Mch1g0587 . 1 318 Core Cell Cycle Gene Families AT2G38620 67.6 1.7e-119 425.6
Mch11g0029 . 11 318 Core Cell Cycle Gene Families AT2G38620 56.2 6.5e-92 334.0
Mch11g0029 . 1 315 Core Cell Cycle Gene Families AT1G76540 82.5 2.6e-154 541.6
Mch1g0587 . 1 312 Core Cell Cycle Gene Families AT1G76540 64.1 1.1e-115 413.3
Mch9g1849 . 1 290 Core Cell Cycle Gene Families AT1G76540 54.0 5.1e-94 341.3
Mch11g0029 . 8 315 Core Cell Cycle Gene Families AT1G20930 86.7 1.9e-157 552.0
Mch1g0587 . 1 318 Core Cell Cycle Gene Families AT1G20930 63.3 3.3e-117 418.3
Mch9g1849 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.4 5.0e-97 351.3
Mch2g0040 . 1 430 Core Cell Cycle Gene Families AT5G10270 79.8 3.4e-204 708.0
Mch10g1090 . 123 439 Core Cell Cycle Gene Families AT5G10270 55.0 9.5e-98 354.4
Mch6g1637 . 109 427 Core Cell Cycle Gene Families AT5G10270 51.6 1.6e-97 353.6
Mch5g0670 . 110 426 Core Cell Cycle Gene Families AT5G10270 53.2 2.8e-97 352.8
Mch11g1889 . 32 348 Core Cell Cycle Gene Families AT5G10270 52.1 8.9e-96 347.8
Mch8g2907 . 102 420 Core Cell Cycle Gene Families AT5G10270 50.7 3.4e-95 345.9
Mch2g0641 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.0 5.7e-95 345.1
Mch3g1322 . 93 409 Core Cell Cycle Gene Families AT5G10270 52.3 1.7e-94 343.6
Mch3g1720 . 119 437 Core Cell Cycle Gene Families AT5G10270 51.6 3.7e-94 342.4
Mch2g0040 . 65 452 Core Cell Cycle Gene Families AT5G64960 72.8 3.4e-163 571.6
Mch10g1090 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.7 8.7e-82 301.2
Mch2g0641 . 196 458 Core Cell Cycle Gene Families AT5G64960 52.5 9.6e-81 297.7
Mch6g1637 . 163 427 Core Cell Cycle Gene Families AT5G64960 51.1 9.6e-81 297.7
Mch5g0670 . 164 426 Core Cell Cycle Gene Families AT5G64960 51.8 6.2e-80 295.0
Mch11g1889 . 86 348 Core Cell Cycle Gene Families AT5G64960 52.5 1.4e-79 293.9
Mch3g1322 . 147 409 Core Cell Cycle Gene Families AT5G64960 51.8 3.1e-79 292.7
Mch2g0640 . 180 444 Core Cell Cycle Gene Families AT5G64960 51.8 6.9e-79 291.6
Mch3g1720 . 173 437 Core Cell Cycle Gene Families AT5G64960 51.1 1.5e-78 290.4
Mch6g0407 . 4 414 Core Cell Cycle Gene Families AT1G73690 75.2 3.7e-174 607.8
Mch6g0407 . 12 348 Core Cell Cycle Gene Families AT1G66750 76.3 2.6e-155 545.0
Mch6g0407 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.7 1.3e-174 609.4
Mch1g0310 . 22 514 Core Cell Cycle Gene Families AT5G63610 71.3 2.2e-197 685.3
Mch8g3155 . 1 481 Core Cell Cycle Gene Families AT4G28980 61.8 5.2e-170 594.3
Mch4g1794 . 5 508 Core Cell Cycle Gene Families AT1G44110 57.2 4.2e-145 511.5
Mch9g0378 . 207 485 Core Cell Cycle Gene Families AT1G44110 55.2 8.1e-88 321.2
Mch11g0583 . 206 472 Core Cell Cycle Gene Families AT1G44110 57.3 1.1e-87 320.9
Mch11g0342 . 91 380 Core Cell Cycle Gene Families AT1G44110 50.7 4.8e-80 295.4
Mch8g0655 . 88 372 Core Cell Cycle Gene Families AT1G44110 50.2 1.2e-78 290.8
Mch8g0407 . 171 432 Core Cell Cycle Gene Families AT1G44110 54.6 7.6e-78 288.1
Mch9g0378 . 206 481 Core Cell Cycle Gene Families AT1G77390 52.2 3.3e-78 289.3
Mch11g0583 . 206 472 Core Cell Cycle Gene Families AT1G77390 53.6 3.6e-77 285.8
Mch8g0407 . 171 428 Core Cell Cycle Gene Families AT1G77390 52.3 6.6e-71 265.0
Mch11g0583 . 16 484 Core Cell Cycle Gene Families AT5G25380 54.3 6.5e-119 424.5
Mch8g0407 . 66 440 Core Cell Cycle Gene Families AT5G25380 55.6 1.6e-104 376.7
Mch4g1794 . 226 493 Core Cell Cycle Gene Families AT5G25380 56.3 1.6e-80 297.0
Mch11g0583 . 44 422 Core Cell Cycle Gene Families AT5G11300 54.1 4.3e-96 348.6
Mch8g0407 . 33 382 Core Cell Cycle Gene Families AT5G11300 52.5 8.3e-84 307.8
Mch4g1794 . 226 446 Core Cell Cycle Gene Families AT5G11300 57.9 1.4e-67 253.8
Mch8g0655 . 90 305 Core Cell Cycle Gene Families AT5G11300 52.8 2.9e-60 229.6
Mch11g0342 . 91 317 Core Cell Cycle Gene Families AT5G11300 52.0 2.4e-59 226.5
Mch9g0378 . 48 486 Core Cell Cycle Gene Families AT1G15570 53.8 1.9e-118 422.9
Mch4g1794 . 227 493 Core Cell Cycle Gene Families AT1G15570 54.3 5.7e-78 288.5
Mch9g0378 . 4 485 Core Cell Cycle Gene Families AT1G80370 52.8 1.0e-119 427.2
Mch4g1794 . 227 506 Core Cell Cycle Gene Families AT1G80370 55.0 8.7e-82 301.2
Mch8g0655 . 3 370 Core Cell Cycle Gene Families AT5G43080 59.1 7.5e-118 420.6
Mch11g0342 . 1 384 Core Cell Cycle Gene Families AT5G43080 56.5 7.5e-110 394.0
Mch4g1794 . 228 508 Core Cell Cycle Gene Families AT5G43080 50.5 2.1e-80 296.2
Mch11g0583 . 208 474 Core Cell Cycle Gene Families AT5G43080 55.1 2.3e-79 292.7
Mch8g0407 . 171 446 Core Cell Cycle Gene Families AT5G43080 50.9 1.7e-74 276.6
Mch8g0655 . 1 370 Core Cell Cycle Gene Families AT1G47210 59.5 3.0e-125 445.3
Mch11g0342 . 1 384 Core Cell Cycle Gene Families AT1G47210 54.8 3.4e-113 405.2
Mch11g0583 . 208 474 Core Cell Cycle Gene Families AT1G47210 53.5 1.4e-77 287.0
Mch9g0378 . 208 480 Core Cell Cycle Gene Families AT1G47210 51.4 2.2e-75 279.6
Mch8g0407 . 171 434 Core Cell Cycle Gene Families AT1G47210 51.1 2.7e-73 272.7
Mch8g0655 . 53 370 Core Cell Cycle Gene Families AT1G47220 54.7 2.4e-94 342.4
Mch11g0342 . 91 381 Core Cell Cycle Gene Families AT1G47220 57.7 2.4e-94 342.4
Mch11g0583 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 2.2e-71 266.2
Mch8g0407 . 171 434 Core Cell Cycle Gene Families AT1G47220 51.1 1.1e-70 263.8
Mch8g0655 . 1 370 Core Cell Cycle Gene Families AT1G47230 58.9 5.3e-122 434.5
Mch11g0342 . 1 383 Core Cell Cycle Gene Families AT1G47230 55.5 1.5e-113 406.4
Mch4g1794 . 229 510 Core Cell Cycle Gene Families AT1G47230 50.9 2.1e-78 289.7
Mch11g0583 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.4 7.7e-73 271.2
Mch9g0378 . 210 480 Core Cell Cycle Gene Families AT1G47230 51.6 2.2e-72 269.6
Mch8g0407 . 171 434 Core Cell Cycle Gene Families AT1G47230 50.9 3.0e-69 259.2
Mch1g0470 . 1 447 Core Cell Cycle Gene Families AT4G37490 54.0 1.7e-111 399.8
Mch1g0470 . 1 344 Core Cell Cycle Gene Families AT5G06150 54.1 1.7e-82 303.1
Mch11g0059 . 234 406 Core Cell Cycle Gene Families AT5G06150 52.0 5.6e-46 181.8
Mch1g0470 . 1 404 Core Cell Cycle Gene Families AT3G11520 55.6 6.7e-104 374.4
Mch2g0203 . 25 365 Core Cell Cycle Gene Families AT3G11520 51.0 1.3e-83 307.0
Mch2g0203 . 1 403 Core Cell Cycle Gene Families AT2G26760 52.6 1.3e-110 396.7
Mch1g0470 . 90 445 Core Cell Cycle Gene Families AT2G26760 56.1 4.1e-101 365.2
Mch1g1647 . 8 443 Core Cell Cycle Gene Families AT2G17620 58.4 5.3e-126 448.0
Mch11g0059 . 108 508 Core Cell Cycle Gene Families AT2G17620 53.2 8.0e-106 380.9
Mch1g1647 . 5 400 Core Cell Cycle Gene Families AT4G35620 58.1 1.3e-104 376.7
Mch11g0059 . 101 465 Core Cell Cycle Gene Families AT4G35620 51.9 4.3e-87 318.5
Mch11g0059 . 75 508 Core Cell Cycle Gene Families AT1G20610 63.2 1.3e-140 496.5
Mch1g1647 . 1 443 Core Cell Cycle Gene Families AT1G20610 55.7 4.1e-118 421.8
Mch11g0059 . 75 405 Core Cell Cycle Gene Families AT1G76310 62.8 1.8e-100 362.8
Mch1g1647 . 1 340 Core Cell Cycle Gene Families AT1G76310 51.2 1.1e-78 290.4
Mch1g0470 . 175 340 Core Cell Cycle Gene Families AT1G76310 53.5 8.4e-42 167.9
Mch2g0203 . 137 304 Core Cell Cycle Gene Families AT1G76310 52.4 3.2e-41 166.0
Mch4g0020 . 189 643 Core Cell Cycle Gene Families AT1G16330 52.7 3.1e-117 419.5
Mch9g2211 . 57 385 Core Cell Cycle Gene Families AT1G70210 59.5 9.8e-99 357.1
Mch1g1386 . 40 321 Core Cell Cycle Gene Families AT2G22490 54.0 2.2e-80 296.2
Mch10g0481 . 1 339 Core Cell Cycle Gene Families AT4G34160 52.9 1.8e-85 313.2
Mch11g0329 . 25 292 Core Cell Cycle Gene Families AT4G34160 51.1 7.6e-68 254.6
Mch10g0481 . 19 371 Core Cell Cycle Gene Families AT3G50070 50.4 1.8e-87 319.7
Mch1g1237 . 19 341 Core Cell Cycle Gene Families AT3G50070 50.5 2.3e-82 302.8
Mch8g0665 . 43 346 Core Cell Cycle Gene Families AT3G50070 51.0 4.7e-75 278.5
Mch11g0329 . 25 300 Core Cell Cycle Gene Families AT3G50070 50.4 1.2e-67 253.8
Mch1g1386 . 43 263 Core Cell Cycle Gene Families AT5G65420 59.4 1.5e-70 263.1
Mch8g0255 . 69 268 Core Cell Cycle Gene Families AT5G65420 55.4 2.1e-59 226.1
Mch1g1386 . 24 221 Core Cell Cycle Gene Families AT5G10440 55.0 3.0e-56 215.3
Mch8g0255 . 65 242 Core Cell Cycle Gene Families AT5G10440 51.4 9.8e-47 183.7
Mch1g1181 . 1 274 Core Cell Cycle Gene Families AT5G27620 65.0 1.1e-98 356.7
Mch3g0613 . 1 87 Core Cell Cycle Gene Families AT2G27960 93.1 3.6e-45 177.2
Mch2g0301 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.7e-42 168.3
Mch3g0613 . 1 83 Core Cell Cycle Gene Families AT2G27970 86.7 2.6e-40 161.0
Mch2g0301 . 1 76 Core Cell Cycle Gene Families AT2G27970 90.8 1.4e-38 155.2
Mch9g1718 . 35 988 Core Cell Cycle Gene Families AT3G12280 74.5 0.0e+00 1374.4
Mch9g0766 . 1 481 Core Cell Cycle Gene Families AT1G02970 59.6 1.9e-159 559.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001137 2 4 2 5 2 1 1 2 1 3 2 1 5 2 2 3 1 3 3 2 2 2 1 2 2 1 2 11 4 3 77