Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0471 ATGAGGGAAGAACACTCGAATTGGTTCTCGAGGTGGGAAGAGGAGCTTCCTTCGCCGGATGAATTGATGCCGCTTTCTCAAACCCTAATTACCCCCGATCTAGCTCTGGCTTTTGATATTCAAAATCCCACCAATAGCAGCCCGCCGCTGCCCTGCCCGTCCCCTCCTCTTTCGAATCCCCTGCCCGGCTCCGGCAACGGAATTGCGCCGCCCAACTCGGCGGATTTCGGCGATTCCGCCGATTTGGGCTCCGGCGGCGCCAGCGACGAGCCGGCCCGGACCCTCAAGCGGCCGCGTCTCGTCTGGACGCCGCAGCTCCACAAGCGATTCGTGGACGCCGTGGCGCATTTGGGGATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTAATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTTCCCATTTGCAGAAGTACCGCCTCTACCTCAAGCGGATGCAGGGCTTGTCCGCCGGCGGCGGCGGCGGCGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACCGACCACTTGTTCGCTAGCTCCCCGGTCCCGCCCCATTTGCTGCACTCTGCCCGCGCCAGTTCGGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCGGTTGTCGCCCATCCCCAGCTGCAGCCACCATATCACCGGCAGGTCGGGCATTTCGGGTCGCCTCCGAACGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCACAGCCCATCCATAGAATGGGGGCACCAGTGCATAATTCAGTACCAAATTACATTGAGGATTTGGAATCAGCCAATGCAACTGGAGGAAGAAAAGTCCTCACTTTATTTCCCACTGGGGATGATTGA 903 58.69 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNSSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGGASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARASSDHFLPFVPMATLQQHHHHQQQMAAAAAVVAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIEDLESANATGGRKVLTLFPTGDD 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9156443 9158200 + MC01g0243 Mch1g0471 675363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0471 300 Gene3D - 94 156 - -
Mch1g0471 300 FunFam Two-component response regulator 93 156 - -
Mch1g0471 300 MobiDBLite consensus disorder prediction 39 96 - -
Mch1g0471 300 MobiDBLite consensus disorder prediction 1 18 - -
Mch1g0471 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Mch1g0471 300 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Mch1g0471 300 MobiDBLite consensus disorder prediction 1 25 - -
Mch1g0471 300 MobiDBLite consensus disorder prediction 46 60 - -
Mch1g0471 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Mch1g0471 300 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 259 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0471 300 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0471 Mch-Chr1:9156443 Mch5g1325 Mch-Chr5:14125354 8.32E-135 dispersed
Mch1g0471 Mch-Chr1:9156443 Mch7g1214 Mch-Chr7:15730654 6.06E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42672 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0471 - - - 0.0