Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0471 ATGAGGGAAGAACACTCGAATTGGTTCTCGAGGTGGGAAGAGGAGCTTCCTTCGCCGGATGAATTGATGCCGCTTTCTCAAACCCTAATTACCCCCGATCTAGCTCTGGCTTTTGATATTCAAAATCCCACCAATAGCAGCCCGCCGCTGCCCTGCCCGTCCCCTCCTCTTTCGAATCCCCTGCCCGGCTCCGGCAACGGAATTGCGCCGCCCAACTCGGCGGATTTCGGCGATTCCGCCGATTTGGGCTCCGGCGGCGCCAGCGACGAGCCGGCCCGGACCCTCAAGCGGCCGCGTCTCGTCTGGACGCCGCAGCTCCACAAGCGATTCGTGGACGCCGTGGCGCATTTGGGGATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTAATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTTCCCATTTGCAGAAGTACCGCCTCTACCTCAAGCGGATGCAGGGCTTGTCCGCCGGCGGCGGCGGCGGCGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACCGACCACTTGTTCGCTAGCTCCCCGGTCCCGCCCCATTTGCTGCACTCTGCCCGCGCCAGTTCGGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCGGTTGTCGCCCATCCCCAGCTGCAGCCACCATATCACCGGCAGGTCGGGCATTTCGGGTCGCCTCCGAACGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCACAGCCCATCCATAGAATGGGGGCACCAGTGCATAATTCAGTACCAAATTACATTGAGGATTTGGAATCAGCCAATGCAACTGGAGGAAGAAAAGTCCTCACTTTATTTCCCACTGGGGATGATTGA 903 58.69 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNSSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGGASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARASSDHFLPFVPMATLQQHHHHQQQMAAAAAVVAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIEDLESANATGGRKVLTLFPTGDD 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9156443 9158200 + MC01g0243 Mch1g0471 675363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0471 300 Gene3D - 94 156 - -
Mch1g0471 300 FunFam Two-component response regulator 93 156 - -
Mch1g0471 300 MobiDBLite consensus disorder prediction 39 96 - -
Mch1g0471 300 MobiDBLite consensus disorder prediction 1 18 - -
Mch1g0471 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Mch1g0471 300 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Mch1g0471 300 MobiDBLite consensus disorder prediction 1 25 - -
Mch1g0471 300 MobiDBLite consensus disorder prediction 46 60 - -
Mch1g0471 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Mch1g0471 300 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 259 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0471 300 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0471 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0471 Mch-Chr1:9156443 Mch5g1325 Mch-Chr5:14125354 8.32E-135 dispersed
Mch1g0471 Mch-Chr1:9156443 Mch7g1214 Mch-Chr7:15730654 6.06E-23 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch8g0732 . 15 150 G2-like Transcription Factor Family AT5G42630 62.8 8.9e-40 160.6
Mch11g0241 . 10 152 G2-like Transcription Factor Family AT5G42630 55.2 9.2e-37 150.6
Mch8g3114 . 12 488 G2-like Transcription Factor Family AT2G03500 50.3 2.1e-90 329.7
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT1G25550 58.2 7.6e-57 217.6
Mch9g1987 . 19 253 G2-like Transcription Factor Family AT1G25550 53.8 6.2e-51 198.0
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT3G25790 50.6 2.3e-39 159.5
Mch3g0205 . 1 289 G2-like Transcription Factor Family AT3G46640 50.2 3.5e-61 232.3
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT5G05090 57.4 1.3e-74 276.6
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT5G05090 54.6 9.5e-73 270.4
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT4G13640 56.2 2.9e-62 235.7
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch5g1160 . 35 267 G2-like Transcription Factor Family AT1G69580 50.8 2.2e-42 169.9
Mch4g0013 . 1 360 G2-like Transcription Factor Family AT1G79430 51.8 1.3e-72 270.4
Mch5g0198 . 31 209 G2-like Transcription Factor Family AT1G79430 56.8 1.1e-39 161.0
Mch1g1664 . 82 325 G2-like Transcription Factor Family AT2G01060 55.2 6.5e-57 217.6
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT3G10760 63.2 4.7e-93 338.2
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT3G10760 58.3 8.8e-84 307.4
Mch5g1325 . 1 193 G2-like Transcription Factor Family AT2G40970 61.6 3.2e-62 235.3
Mch1g0471 . 1 202 G2-like Transcription Factor Family AT2G40970 61.0 3.0e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42672 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Mch TF