Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0568 CAAACCCAAAGAAATCATATTCCCGCAAAACCTTCTCTCTCTCTAACACCAAAATCTCAACTTTCCTTTTTCTATCTCACTCCAATTAATTTATCTCTCTTCCAAATTAGCAACATGAACGATCTGATGACCAAATCCTTCACCAGCTACGTGGATCTGAAGAAGGCTGCCATGAAAGACATCGACCTCGAGGCCGGTTTAGAAATGGCGTCCACTGACAGCGGCGGTGACATGGTTCTCTTCCTCGAAGAGGCCGAGAAGGTGAAATCGGAGATGGGTTCGATTCGAGAGATCCTTGGAAAGCTCCAGCAGGCCAATGAGGAGACCAAATCGGCTCACAAACCGGAAACTTTGAAATCTCTCCGCCACACCATTAACGTCGACATCGTCACCGTCCTGAAGAAGGCGAGATCTATCCGATCCCAGCTCGAGGAAATGGACCGCACCAATGCTGCCAAGAAGAGGCTCTCTGGCAGCAAAGAAGGATCCGCCATTTACAGGACGCGGATGGCGGTGACAAACGGGCTGCGGAAGAAGCTAAAGGAGCTAATGATGGAGTTCCAGAGCCTGAGGCAACGGATGATGACGGAGTACAAGGAGACGGTGGGGCGGCGGTACTTCACGGTGACGGGAGAGGAGGCGGAGGAGGAGGTGATAGAGAAGATAATAGAGAACGGCGGGGAGGAGTTTCTGGGGAGGGCGATAGAGGAGCACGGGCGGGGGAAGGTGGCGGAGACGGTGGTGGAGATACAGGACCGGCACGGGGCGGCGAAGGAGATAGAGAGGAGCTTGCTGGAGCTGCACCAGGTGTTCTTGGACATGGCAGTGATGGTGGAAGCACAGGGGGAGAAGATGGATGACATTGAACACCATGTCATCAATGCTTCACAGTATGTGACAGATGGGACTAAGGATTTGAAGAATGCTAAGGATTTGCAGAGGAGCAGTAGGAAATGGATGTGTTTGGGGATTTTGCTTCTCATTCTCATTGTTTTTGTTGTTGTTATTCCCATTGCTGTTAGTTTTGGGAGTTCTTGA 1038 51.06 QTQRNHIPAKPSLSLTPKSQLSFFYLTPINLSLFQISNMNDLMTKSFTSYVDLKKAAMKDIDLEAGLEMASTDSGGDMVLFLEEAEKVKSEMGSIREILGKLQQANEETKSAHKPETLKSLRHTINVDIVTVLKKARSIRSQLEEMDRTNAAKKRLSGSKEGSAIYRTRMAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEEAEEEVIEKIIENGGEEFLGRAIEEHGRGKVAETVVEIQDRHGAAKEIERSLLELHQVFLDMAVMVEAQGEKMDDIEHHVINASQYVTDGTKDLKNAKDLQRSSRKWMCLGILLLILIVFVVVIPIAVSFGSS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9904677 9906243 - MC01g0320 Mch1g0568 675460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0568 345 SMART tSNARE_6 242 309 IPR000727 -
Mch1g0568 345 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 75 205 - -
Mch1g0568 345 SMART SynN_4 73 199 IPR006011 GO:0016020(InterPro)
Mch1g0568 345 CDD SynN 78 211 IPR006011 GO:0016020(InterPro)
Mch1g0568 345 CDD SNARE_syntaxin1-like 246 307 - -
Mch1g0568 345 Coils Coil 173 193 - -
Mch1g0568 345 ProSitePatterns Syntaxin / epimorphin family signature. 253 293 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch1g0568 345 Gene3D - 78 205 - -
Mch1g0568 345 PANTHER SYNTAXIN 84 328 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch1g0568 345 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Mch1g0568 345 FunFam Syntaxin 132 240 340 - -
Mch1g0568 345 Pfam Syntaxin 81 282 IPR006011 GO:0016020(InterPro)
Mch1g0568 345 SUPERFAMILY t-snare proteins 77 302 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch1g0568 345 Gene3D - 242 343 - -
Mch1g0568 345 Pfam SNARE domain 284 335 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0568 Mch-Chr1:9904677 Mch3g1169 Mch-Chr3:14936948 1.76E-88 dispersed
Mch1g0568 Mch-Chr1:9904677 Mch5g1533 Mch-Chr5:16307349 2.07E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0568 K08486 - csv:101220775 502.286