Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0569 ATGATTGATGAGATCAAGGCTGCAATCGGCGATGGCGTGCTCACTGCCATGTGGATTTTCTGCGCATCGTCTCTTGGGGTTCTCACCGCCCTCCTGTACTCAGCCGCTGGAGTTTATGGCGTGCCGCTTCATCCGCTCCTCATCACCACTACTCTCGTCTTCCTTCTCGTTTTCGTCTTTAATATAATTGGCGCTGCTTTGGGTGGGGCCAGCTTTAACCCCACCGCCACTGCTGCTTTCTACGCTGCCGGAGTTGGCCCAACCTCTCTTTTCGCCATGGCTCTCCGTTTCCCTGCTCAGGCAGCTGGTGCTGTTGCGGGTGCATTGGCGATCAAGGAGGTGATGCCTATACAATATAAGCACATGCTCGGTGGCCCTTCGCTAAAAGTTGATATTCATACTGGAGCCACAGCTGAAGGAGTTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTGATTGTACTCAGGGGTCCCTCCAGCGAAGTAATTAAAACATGGTTGCTGGCTATGGCTACTGTAGCATTAATCGTTGCTGGTTCTCCTTACACTGGGCCTTCCATGAATCCTGCAAATGCATTTGGGTGGGCATATATAAACAACAGGCACGACACATGGGAGCAGTTGTACGTGTACTGGATCTCCCCCTTCATAGGAGCCATTTTGGCTGCTTGGATTTTCCGATTCATCTTCCCACCACCAGTCCCAGCCCGAGCCCGAGCCCGAGCCCCAGCCAAGCAGAAGAAAGCTTGA 750 51.87 MIDEIKAAIGDGVLTAMWIFCASSLGVLTALLYSAAGVYGVPLHPLLITTTLVFLLVFVFNIIGAALGGASFNPTATAAFYAAGVGPTSLFAMALRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHTGATAEGVLTFIISFAVLLIVLRGPSSEVIKTWLLAMATVALIVAGSPYTGPSMNPANAFGWAYINNRHDTWEQLYVYWISPFIGAILAAWIFRFIFPPPVPARARARAPAKQKKA 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9907377 9911596 + MC01g0321 Mch1g0569 675461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0569 249 Gene3D Glycerol uptake facilitator protein. 3 237 IPR023271 -
Mch1g0569 249 FunFam Aquaporin SIP1-1 2 242 - -
Mch1g0569 249 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0569 249 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0569 249 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0569 249 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0569 249 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0569 249 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0569 249 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0569 249 PANTHER AQUAPORIN SIP1-1 4 238 IPR044222 GO:0015250(InterPro)
Mch1g0569 249 SUPERFAMILY Aquaporin-like 5 236 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0569 Mch-Chr1:9907377 Mch1g0800 Mch-Chr1:11615301 7.40E-14 dispersed
Mch1g0569 Mch-Chr1:9907377 Mch2g0356 Mch-Chr2:2667614 9.14E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0569 K09875 - csv:101220534 414.461