Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0580 TCATTTTTCTCTCCCATGGCAGAAGATAATCAAGTTGAAGTTGATACTCCTCCTTTCTTTCTCTGTCCCATCTCTCTGCAAATCATGAAAGATCCGGTGACGGTGGCGTCCGGCATAACCTACGACCGGGAGAGCATTGAGAAGTGGCTGTTTTCCGACAAACATACCACGTGCCCCGTCACACAGGTGGTCTTGTCGAACTCCGATCTCACTCCCAACCATACTCTTCGACGAGTGATTCAGGCTTGGTGCACTCTCAATGCTCGTAGCGGCAGCGTCGAGAGGTTTCCGACACCGAAGCCTCCTGTCGACCGGACGCAGGTCGTCAAGATTCTGGCCGATGTGAATTTGTCTCCGTTCTCCCAACAGAAATGTCTCCAACGACTTCGATCCATTGCATCGGCGAATGAAACAAACAAACGCTGCATGGAATCTGCTGGAGTTGTGGAGTTCTTGGCCGGAGTTGTGTGTAATTCCATCAACGTGGAATCCAGCTACCAAGCAAATTTGGGCGACGAGGCTTTGAGCATTCTTCACAAACTCCAAATCTCTGAAGCCGGACTGAAATTTCTTCTCAGCAACAATGGCGGCGTCTTCGTCGCGTCCTTAATCAAAGTCCTGCAGAACGGAACCTACGGATCTCGCGCTTACGCCGTAATGCTATTGAAATCGATCTTCGAAGTCGCCGATCGGATCCAGATCGTTAGCGTAACCGCCGAATTCTTCATCGAAATCGTTCAAGTTCTGAAGGATCAGTTCTCGCAACAGGCCACGAAAGCGGCATTGAAACTTCTAATCACTCTCTGTTCGAGTTTCAGAAACAGAGTAAAGGCGATTCAGGCCGGCGCGGTTCCGGTTCTGATCGATCTCCTCCTCGACCTCGATTCGTCGGAGAAGCGAGCGTGCGAGATGATTCTGATGGCACTGGATCTGCTCTGCGGGTGCGCCGACGGCCGGGCGGAGCTGCTTAACCATGCGGCGGGGCTCGCCGTCGTATCGAAGAAGATTCTGAGAGTTTCTTGGCTCGGAAGCGAGAAGGCCGTCGGAATCTTGTGCTCCGTCGCGAAGTTCTCCGCGAGCCAAAGCGTCGTCCAGGAGATGCTGCGGCTCGGAGTTGTGACGAAGCTGTGCTTTCTACTGCAAGTCGTCGGCGCCGGAAGTAAAGCGAAGGAGAAAGCCAAAGAGATTCTGAAGCTCCATGGTCGGACATGGCGGAATTCTTCTTGCTTGCCTTTGAGTTTG 1242 52.58 SFFSPMAEDNQVEVDTPPFFLCPISLQIMKDPVTVASGITYDRESIEKWLFSDKHTTCPVTQVVLSNSDLTPNHTLRRVIQAWCTLNARSGSVERFPTPKPPVDRTQVVKILADVNLSPFSQQKCLQRLRSIASANETNKRCMESAGVVEFLAGVVCNSINVESSYQANLGDEALSILHKLQISEAGLKFLLSNNGGVFVASLIKVLQNGTYGSRAYAVMLLKSIFEVADRIQIVSVTAEFFIEIVQVLKDQFSQQATKAALKLLITLCSSFRNRVKAIQAGAVPVLIDLLLDLDSSEKRACEMILMALDLLCGCADGRAELLNHAAGLAVVSKKILRVSWLGSEKAVGILCSVAKFSASQSVVQEMLRLGVVTKLCFLLQVVGAGSKAKEKAKEILKLHGRTWRNSSCLPLSL 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9979146 9980903 - MC01g0330 Mch1g0580 675472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0580 414 FunFam RING-type E3 ubiquitin transferase 16 89 - -
Mch1g0580 414 SMART Ubox_2 19 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch1g0580 414 SUPERFAMILY ARM repeat 109 381 IPR016024 -
Mch1g0580 414 ProSiteProfiles U-box domain profile. 15 90 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch1g0580 414 Pfam U-box domain 17 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch1g0580 414 CDD RING-Ubox_PUB 17 70 IPR045210 -
Mch1g0580 414 PANTHER WDSAM1 PROTEIN 13 411 IPR045185 GO:0061630(InterPro)
Mch1g0580 414 Gene3D - 106 402 IPR011989 -
Mch1g0580 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 95 IPR013083 -
Mch1g0580 414 SUPERFAMILY RING/U-box 8 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0580 Mch-Chr1:9979146 Mch2g0219 Mch-Chr2:1679765 1.04E-132 dispersed
Mch1g0580 Mch-Chr1:9979146 Mch5g1539 Mch-Chr5:16414375 4.73E-147 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0580 - - - 0.0