Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0595 TTCGCGATTAGGGTTAGGCCATTCATCGGAATGGAAGCGTCTGGTAGCGACCCCGACGCTCATAGAGCTGCTTCCACCAGTGGTAGTTCAAGAAGGTTTGGAATGTTGGCTGCCTCGAACATAATTCAGGCTCCTCTTTCTGCGTTGTTGGAGTATTCGGGTCTTCTTCGTGGCCGCCCAAGTCATCAAGAATCCGAGGCATTGATAAGTGCACGGTTGCCTTCGGGGTTTCGTGACCATATTCGCAGCCAGATTGAAGAATCTTCTGGTTCCACCAACGACGGAGAGGTTTCAATTAGGATCATTGGGGCGGGGGAACAAGAACATGGTAGGGATGGTGCTGGATTAGTTGTGGGGCAGGCGAGGGAAGTAGGCGGTCAGAATGCTGTATCGTCACAATCTGTTTCGGGGTTGGCATCAGAGCTTAGCCAGGGAGATCCTGCTCCTGAACGTGGGGCAAGAGAAGGCATTCCTCAACCAATAAACGGAGGTGCTGATGGAGATGCCTTGGAGGCGGCTGGGGGAAATGGCAGGGATTCTTCTTACCAAAGATATGATATTCAGCAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACAATTTGGATAGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGAGAGAGAAAAATCTCTGTTTTGGTTGGAATTTCTCTTGCATTCACTATTCATGTTATTGGTGTGTATTGGTGGTATCAGAATGATGATCTTTTATATCCACTGATCATGCTTCCTCCCAGAGCGATACCTCCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCCGTGATGGTGGTCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGGGGCCGAAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTTGAATATCTGCTACTACTGTACCGTGCCTTGTTGCCTACTCCGGTCTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGTCTATTTTCATCACTGTTGACAGGACTGTATTTGACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAGAGCATTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGTGCCGCTGGTGATTTGTGTGCTATTTGCCAAGAAAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACATGTCCGTTGTGCAGGGCTTTGGTTAAACCCGCGGATCTGAGGTCATTTGGTGATGGATCAACAAGTCTGTTTTTCCAGGTTTTCTAA 1431 46.33 FAIRVRPFIGMEASGSDPDAHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRDHIRSQIEESSGSTNDGEVSIRIIGAGEQEHGRDGAGLVVGQAREVGGQNAVSSQSVSGLASELSQGDPAPERGAREGIPQPINGGADGDALEAAGGNGRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALRALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10143153 10150139 - MC01g0344 Mch1g0595 675487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0595 476 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 22 476 IPR044235 GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:1904294(InterPro)
Mch1g0595 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 463 IPR013083 -
Mch1g0595 476 CDD RING-HC_RNFT1-like 413 453 - -
Mch1g0595 476 ProSiteProfiles Zinc finger RING-type profile. 415 453 IPR001841 -
Mch1g0595 476 ProSitePatterns Zinc finger RING-type signature. 430 439 IPR017907 -
Mch1g0595 476 SMART ring_2 415 452 IPR001841 -
Mch1g0595 476 MobiDBLite consensus disorder prediction 135 177 - -
Mch1g0595 476 Pfam Ring finger domain 414 453 IPR001841 -
Mch1g0595 476 SUPERFAMILY RING/U-box 410 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0595 Mch-Chr1:10143153 Mch9g1370 Mch-Chr9:16099831 9.30E-192 dispersed
Mch1g0595 Mch-Chr1:10143153 Mch6g2410 Mch-Chr6:26023092 1.75E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0595 - - - 0.0