Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0602 TCTGCAGTTAAAGCATTGCTAGCAGTAAAGGGGAGTCTAATTGATTCTATGGGCCGTCTTAAGAATTGGAATATGGGAGATCCTTGCACAAGTAATTGGACTGGAGTAGTATGCGACTATTCCGATGGAGCGGTCGGGAACTTACGTGTCAAAGAACTCCAGCTATTGAATATGAACCTATCTGGAAACTTGGCCCCTGAGATTGGCCAATTGTCGGGACTCGAGAAGTTAGATTTCATGTGGAATAACCTAACTGGTTCAATTCCAAAGGAGATTGGCAGTATTAGGTCGCTGAAACTCTTACTCTTAAATGGAAATAAACTATCTGGTCCTCTTCCAGATGAGCTTGGTAATCTTACAAACCTCAACAGATTTCAAATAGATGAGAATCAAATTTCAGGGCATATACCAAAATCATTTGCTAACTTGATCAGCGTGAAGCACTTCCACTTCAATAACAACTCACTTAGTGGTCAAATTCCATCTGAGCTTTCCAAATTACAAAATCTTCTTCATTTGCTTTTAGATAACAATAACTTGGCAGGTTCTCTGCCACCAGAACTTCCAACTTTGCAAACTCTACGCATTCTGCAACTTGATAACAACAACTTCGAAGGTGAAATTCCAGCATCTTATGAAAACTTTTCTACATTGGTGAAATTATTTTTCCAAATAAGCAATTGGCTCCATATCTTCTTGAATGGTACTAATGCTTTTCTCTACCACCATTATGGTTCTGGCAGAAGTCTTAGGAATTGCAGCTTGGGAGGACCGATTCCTGATTTTAGCAAGATTCCAAATCTCAGTTACTTGGATCTTAGCTGGAATCATTTTACTGGACCGATACCGCCATATAACCTCTCTTCTGAAATGACAACAATAATTCTGTCGCATAACCAGCTGAATGGATCCATACCCAGCAGTTTCTCCGATCTTCCTGTCCTCCAGAAACTGTCACTTGAGAACAACTCTCTGAATGGTTCTGTACCTTCTTCACTATGGGAGAAAATGTCCTTCAATTCAAGTGCTCGACTTACACTTGATCTTCAGAACAACGCGTTTTCGAACATTTCTGGAAGCACAAACCCTCCAGCTAATGTCACCCTAAGGCTTGAAGGAAATCCAATCTGCAAAAATTTAAGTGGAAAAAAGTCTAACCAGTTCTGTGCATCTAAAATTGTAGAGGATGGGATGCATAGAGGATTAGGCAATGAAACATGTCCAGTTAAAGGTTGCCCAACAGATAGTTTTTTTGAATATGTGCCAGATTCTCCTTCATGCTTTTGTGCATCACCCCTTGGGATCGGATATAGGCTGAAGAGTCCAAGTTTTTCTTACCTTCCCCCATACGTATTTTCATTTCAAGCATATCTGACAAGGGAAATCAGTTTGGATAAGCATCAATTGTTGATCGATTCATACGATTGGGAAGGATCTCGCCTGAGGATGTATCTGAAGATTTTTCCATCATTTGATAGCGGTACTCATATGTTGAATGGAAGTGAGGTGATTCGAATTACAGAAAAGTTTATGTCATGGAATTTTTCTCGAGAAGACTTCTTTGGCCCATACGAGCTTCTCAACTTCACGCTCCCTGGCCCTTTTCAGACTGCGGTAACCATACTTCTGTTCATTAGGCGATCCAGTTACCGTCACAACTCATCAAGGAAAAACTTCTCTTCTAAGATTGGTCTCAAAATTGATGGTGTAAAAGCATTTTCTTTCAAGGAAATGCAATCAGCTACTGGAAGTTTTAACCGCTCAACTCAAGTTGGCCAAGGAGGTTATGGCAAAGTCTATAAAGGCATATTGTCAGATAATTCAGTTGTAGCCATCAAGCGTGCAGAAGAAGGATCCTTACAAGGCCAAAAGGAATTTTTGACAGAGATACAACTCTTATCGAGATTACATCACCGAAACTTAGTTTCCCTAATCGGATATTGCGACGAAGAAGGGGAGCAGATGCTGGTTTACGAGTTTATGCCGAATGGAACTTTGCGGGACTGGCTTTCTGGTTTTGGACTTTCTGCCAAAACTACAGCTACAGTAAACCTGAACTTTCTTATGAGACTACAAATTGCACTGGGTTCAGCAAAAGGCATACTGTATCTCCATACTGAAGCAAATCCTCCTATATATCACCGCGACATCAAAGCTAGAAACATACTCCTTGATGCCAAGCTCACTGCCAAAGTGGCTGATTTTGGATTGTCGCGTCTTGCTCCTGATCTCGATTACGAAGGGGCTGTTCCTGGACATATATCTACTGTTGTGAAGGGTACCCCGGGTTATCTTGATCCAGAGTACTTTTTAACCCATAAATTGACAGACAAGAGTGATGTTTATAGCCTTGGAGTGGTGTTTTTGGAGCTCTTGACGGGCATGCACCCTATTTCACACGGCAAAAACATCGTTCGTGAGGTAAAATTGGCACATCAACTGGGAACAGTTCTTTCCATTGTAGACACTAGGTTGGGTTCTTTTGCACCGGAGTGTTTAGAGAGGTTTGTCGCTTTGGCTCTCAGTTGTTGCCACGACAAGCCAGAAGAGCGGCCATCAATGCGGGTCGTGGTGAGGGAGCTAGAGAACATACTAAACATGATGCCTGATGATGGCAGCACCTCGTATTCGGACTTATCCCCAAAATCAAGCACCAGAGTTCCGTCCTCACCAACATCATCATCCTGCATCACCCATGAACAGTTTGCATCGGGAAGCATTTCGGGAAGCGATCTCGTCAGCGGCATCGTGCCAACCATCAGACCTCGCTGA 2772 42.32 SAVKALLAVKGSLIDSMGRLKNWNMGDPCTSNWTGVVCDYSDGAVGNLRVKELQLLNMNLSGNLAPEIGQLSGLEKLDFMWNNLTGSIPKEIGSIRSLKLLLLNGNKLSGPLPDELGNLTNLNRFQIDENQISGHIPKSFANLISVKHFHFNNNSLSGQIPSELSKLQNLLHLLLDNNNLAGSLPPELPTLQTLRILQLDNNNFEGEIPASYENFSTLVKLFFQISNWLHIFLNGTNAFLYHHYGSGRSLRNCSLGGPIPDFSKIPNLSYLDLSWNHFTGPIPPYNLSSEMTTIILSHNQLNGSIPSSFSDLPVLQKLSLENNSLNGSVPSSLWEKMSFNSSARLTLDLQNNAFSNISGSTNPPANVTLRLEGNPICKNLSGKKSNQFCASKIVEDGMHRGLGNETCPVKGCPTDSFFEYVPDSPSCFCASPLGIGYRLKSPSFSYLPPYVFSFQAYLTREISLDKHQLLIDSYDWEGSRLRMYLKIFPSFDSGTHMLNGSEVIRITEKFMSWNFSREDFFGPYELLNFTLPGPFQTAVTILLFIRRSSYRHNSSRKNFSSKIGLKIDGVKAFSFKEMQSATGSFNRSTQVGQGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIQLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWLSGFGLSAKTTATVNLNFLMRLQIALGSAKGILYLHTEANPPIYHRDIKARNILLDAKLTAKVADFGLSRLAPDLDYEGAVPGHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVKLAHQLGTVLSIVDTRLGSFAPECLERFVALALSCCHDKPEERPSMRVVVRELENILNMMPDDGSTSYSDLSPKSSTRVPSSPTSSSCITHEQFASGSISGSDLVSGIVPTIRPR 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10190215 10199365 - MC01g0350 Mch1g0602 675494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0602 923 Gene3D Phosphorylase Kinase; domain 1 556 660 - -
Mch1g0602 923 MobiDBLite consensus disorder prediction 869 895 - -
Mch1g0602 923 Gene3D Ribonuclease Inhibitor 1 239 IPR032675 -
Mch1g0602 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0602 923 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 661 877 - -
Mch1g0602 923 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 1 161 - -
Mch1g0602 923 ProSiteProfiles Protein kinase domain profile. 585 865 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0602 923 SMART serkin_6 585 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0602 923 Pfam Protein kinase domain 586 858 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0602 923 Pfam Leucine Rich Repeat 194 214 IPR001611 GO:0005515(InterPro)
Mch1g0602 923 Pfam Leucine Rich Repeat 292 312 IPR001611 GO:0005515(InterPro)
Mch1g0602 923 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Mch1g0602 923 Pfam Leucine Rich Repeat 146 167 IPR001611 GO:0005515(InterPro)
Mch1g0602 923 Pfam Leucine Rich Repeat 267 284 IPR001611 GO:0005515(InterPro)
Mch1g0602 923 Pfam Leucine Rich Repeat 315 334 IPR001611 GO:0005515(InterPro)
Mch1g0602 923 PANTHER RECEPTOR-LIKE PROTEIN 55 21 862 - -
Mch1g0602 923 ProSitePatterns Protein kinases ATP-binding region signature. 591 613 IPR017441 GO:0005524(InterPro)
Mch1g0602 923 CDD STKc_IRAK 591 864 - -
Mch1g0602 923 SUPERFAMILY Protein kinase-like (PK-like) 570 897 IPR011009 -
Mch1g0602 923 Pfam Leucine rich repeat N-terminal domain 3 39 IPR013210 -
Mch1g0602 923 Gene3D Transferase(Phosphotransferase) domain 1 661 878 - -
Mch1g0602 923 SUPERFAMILY L domain-like 14 378 - -
Mch1g0602 923 Gene3D Ribonuclease Inhibitor 248 411 IPR032675 -
Mch1g0602 923 FunFam Leucine-rich repeat protein kinase family protein 549 660 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0602 Mch-Chr1:10190215 Mch5g1136 Mch-Chr5:10017529 9.19E-91 dispersed
Mch2g1486 Mch-Chr2:11215015 Mch1g0602 Mch-Chr1:10190215 3.21E-83 transposed
Mch2g1882 Mch-Chr2:18935765 Mch1g0602 Mch-Chr1:10190215 1.51E-16 transposed
Mch3g0010 Mch-Chr3:81591 Mch1g0602 Mch-Chr1:10190215 6.04E-233 transposed
Mch5g2026 Mch-Chr5:19850283 Mch1g0602 Mch-Chr1:10190215 8.66E-95 transposed
Mch1g0602 Mch-Chr1:10190215 Mch9g1442 Mch-Chr9:16825558 4.76E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77105 PF00069 Pkinase 3.90E-46 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0602 - - - 0.0