Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0613 ATGGCTTCCCAAACCCAAACAGAGCCATGGCTGCTCGAAAACGGAACCCTCAAGCGCTTGACCAAAGACAGCCGCCATGGCCACGGTCGAACCGCCCACAACATGTCCTCCTCCTCCCTCCGCAAAAAGTCCGATTTAACCCTCGTCTCCAAGATCCGCTTCCCCTGCCTCCGCAACTTCCTCATCAACCTCCAGGAGGTCATTTTGGGAACTAAGCTCTCCATTCTCTTCCCCGCCATTCCCCTCGCTATTATCGCTCAAATCTTTCGCTTTGGAAGACCTTGGGTTTTCGCTTTGAGCTTGCTTGGCCTCACGCCATTGGCCGAACGTGTCAGCTTCCTCACCGAGCAAATCGCTTATTTCACTGGTCCAACAGTTGGGGGGCTTTTGAATGCAACGTGTGGAAATGCGACAGAATTGATAATTGCAATTCTTGCACTTACTCAACGAAAGATAGACGTGGTGAAGTATTCTCTTCTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTCCTTGGAACCTCTCTCTTCTGCGGTGGCATTGCAAATATGAGAACCGAGCAGAATTACGACAGGAGGCAAGCCGATGTCAATGCACTGATGCTGATGCTTTCATTACTGTGCCACCTGTTGCCGTTATTGTTTGGCTACGCCGCCTCCTCCGCCGCCACCGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATCGTTATGCTCTCCGCTTACATTGCTTATTTGGTCTTCCAGCTCTGGACTCACCGCCAGTTATTTGAAGAGGATGGTGACGACGACGTCGTTTCTGATGAAGAGGCCGTGATTGGATTCGGGAGTGCATTTGCATGGCTTATAGGAATGACAATCCTCATTGCGCTGCTGTCGGAATACGTTGTCAACTCAATTGAGGAAGCATCAACTTCTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATTTTGCTACCGATTGTTGGAAACGCTGCTGAACACGCGGGAGCTATCATATTTGCTTTCAAAAATAAATTGGACATAACTTTGGGGGTTGCTTTGGGGTCTGCGACACAAATTGCATTGTTTGTGATTCCAATGTGTGTGATCGTGGCGTGGACGATGGGAGTGGACATGGACCTGAATTTCAACATAATGGAGACGGGCTCGCTTGGGCTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTATTCTTTTGCTGTGCTACATTATTATTGCTGCTTGCTTCTTTGTCTCCAAGACCCAACCAGGTGACTATCTTTCTCTCTCTAAAATGTTCGGGTTAGGGTTCGGATTTGGAAAGTCTAATTTTTGCGTTGTTTAG 1359 48.79 MASQTQTEPWLLENGTLKRLTKDSRHGHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRNFLINLQEVILGTKLSILFPAIPLAIIAQIFRFGRPWVFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANMRTEQNYDRRQADVNALMLMLSLLCHLLPLLFGYAASSAATAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEEDGDDDVVSDEEAVIGFGSAFAWLIGMTILIALLSEYVVNSIEEASTSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIALFVIPMCVIVAWTMGVDMDLNFNIMETGSLGLAIIATAFTLQDGTSHYIKGLILLLCYIIIAACFFVSKTQPGDYLSLSKMFGLGFGFGKSNFCVV 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10320444 10326676 + MC01g0358 Mch1g0613 675505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0613 452 FunFam Vacuolar cation/proton exchanger 124 267 - -
Mch1g0613 452 Pfam Sodium/calcium exchanger protein 279 422 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0613 452 Pfam Sodium/calcium exchanger protein 95 252 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0613 452 NCBIfam calcium/proton exchanger 78 422 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Mch1g0613 452 FunFam Vacuolar cation/proton exchanger 268 423 - -
Mch1g0613 452 Gene3D - 124 423 IPR044880 -
Mch1g0613 452 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 426 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0613 Mch-Chr1:10320444 Mch8g1017 Mch-Chr8:7198468 1.13E-107 dispersed
Mch10g1417 Mch-Chr10:13332115 Mch1g0613 Mch-Chr1:10320444 1.58E-113 transposed
Mch2g0453 Mch-Chr2:3304559 Mch1g0613 Mch-Chr1:10320444 2.86E-110 transposed
Mch1g0613 Mch-Chr1:10320444 Mch5g1936 Mch-Chr5:19309968 1.15E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0613 K07300 - csv:101213857 693.345