Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0627 ATGGCCGCCGCCACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCCCCGACGTGCGGCCGAGCTCTGGCCGAGTCCAAGCCCGATTCTCGTTCGGGAAAAAGAAAACCGCGCCAAAGAAATCGTCGAAGCAGATTTCCGATCGGCCGCTGTGGTTCCCCGGCGCCAAGGCGCCGGAGTGGCTGGACGGAAGCTTAGTCGGCGACTACGGCTTCGATCCGTTCGGATTGGGAAAACCGGCGGAGTATCTGCAGTACGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGCGATTCGAGAACTCTGATGTGAAATCGACGCCGTTTCAGCCGTACACGGAAGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAACTGATCCATGGAAGGTGGGCCATGCTGGCCACGCTCGGCGCTCTCTCTGTTGAGTGGCTCACTGGCGTCACCTGGCAAGACGCCGGAAAGGTGGAATTGGTGGAAGGTTCGTCGTACTTGGGGCAGCCACTTCCATTCTCGATCACGACGCTGATCTGGATCGAAGTTCTAGTGATCGGGTACATCGAGTTCCAGAGGAACGCGGAGCTTGACCCGGAGAAGAGGCTGTACCCGGGAGGCAAGTTTTTCGACCCGCTGGGGCTGGCGGAGGACCCGGAGAAGAAGGCCGTCCTCCAACTGGCGGAGATCAAGCACGCCCGCCTCGCCATGGTCGCATTCCTCGGCTTCGCCGTCCAAGCCGCCGTTACCGGCAAAGGCCCGCTCAACAACTGGGCGACCCATCTCAGCGACCCGCTCCACACCACCATTATCGATTCCTTTTCTTCTTCTTCTTAA 867 59.63 MAAATATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSSSS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10424657 10426782 - MC01g0370 Mch1g0627 675519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0627 288 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 8 281 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Mch1g0627 288 SUPERFAMILY Chlorophyll a-b binding protein 47 284 - -
Mch1g0627 288 Gene3D Chlorophyll a/b binding protein domain 55 288 - -
Mch1g0627 288 FunFam Chlorophyll a-b binding protein, chloroplastic 105 286 - -
Mch1g0627 288 Pfam Chlorophyll A-B binding protein 61 257 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0627 Mch-Chr1:10424657 Mch4g2062 Mch-Chr4:22844328 3.68E-42 dispersed
Mch1g0627 Mch-Chr1:10424657 Mch2g0724 Mch-Chr2:4940071 6.74E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0627 K08915 - csv:101208740 531.946