Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0649 GAGAGAGACTGCAGGATTTGCCATTTGGGTTTGGAGAGCAGTAGCGATGAGTGTGGAATTGGAATTGAATTGGGATGTTCTTGTAAGAACGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCAGTGGTAAGCAATGTCATTGGAGCACATGAAGTTGAACCAGTAGAGCAACTCAGTGAGTCGAACAATGCAACGGTATCGACAACCACCGTTGCGACGTCGGTGACCGGTGGTCCCAATGGTGGCCGGAGCTTTTGGCAAGTCCACCGTGTGCTGAATTTTCTTCTGGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTCCATTTCAATGTGCCATCA 393 47.07 ERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10607114 10608377 + MC01g0391 Mch1g0649 675541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0649 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 65 IPR013083 -
Mch1g0649 131 ProSiteProfiles Zinc finger RING-CH-type profile. 1 62 IPR011016 GO:0008270(InterPro)
Mch1g0649 131 Pfam RING-variant domain 4 55 IPR011016 GO:0008270(InterPro)
Mch1g0649 131 PANTHER ZINC FINGER, RING-CH-TYPE 1 130 - -
Mch1g0649 131 SMART ringv_2 3 56 IPR011016 GO:0008270(InterPro)
Mch1g0649 131 SUPERFAMILY RING/U-box 2 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0649 Mch-Chr1:10607114 Mch1g1927 Mch-Chr1:19120316 1.86E-22 dispersed
Mch1g0649 Mch-Chr1:10607114 Mch3g0151 Mch-Chr3:1879493 7.94E-35 wgd
Mch1g0649 Mch-Chr1:10607114 Mch4g2531 Mch-Chr4:25949048 3.48E-56 wgd
Mch1g0649 Mch-Chr1:10607114 Mch5g1893 Mch-Chr5:18987619 3.42E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0649 - - - 0.0