Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0672 ATGGCGGAGGGTTTTGAGGTCTACCATGTCCCACAGCAAAGCAGGAGAGATAAGCTCAGAGTGGGAGGCGCCACTGCTCATCCTCATGCTCATAATAACACCAATAATTTCCACATCGCCGCCACTGCCACTGGAAATTTACTTCCTTTATATCATCATGATCCCTCTTCTTTCTCCGATTTGCTTCCCCAAGATTTCCACAACAACAGCAACCCACTTCTTCCTCCTTTTCCGTCCTCTTACCCGGCGGCGGCGGCGCTCCTTCCCGACCACCACCAGCCCTTGTCCCTCGAGCTCAACCTCCAGCAGCAGCGCTACGGCGCCGCGGTGCCTCCGATTTTCTCTCCTACTCCCATTCATGATTCTTCTATTCCTCTTGCTGGGTACGCCTCCATTTTGAAGGCCTCTAGATTCTTGAGGCCCGCCCAGCAGCTTCTCGAGGACCTCTTCGACTACGCCGCCGGGGCTAACGTTAACGCTAAGTTGCCGCCGGATTCCGCCATCCTCGTCGACCCTCTTCTCGAAACCCTCGGCGGAGATGTTGCCGCCGCCGCCGCCGATCATGATCCCATCAGCTGTGATGATGCCACGGAAGGCCGGAGGAAGAAATCGCGCCTTATTTCCATGCTCGACGAGGTTTACAGAAGATATAAGCAATACTACCAGCAGATGCAAGCCGTGGTTACAACATTTGAATACGTTGCAGGGCTTGGGAACGCAGCTCCCTACGTGAACTTAGCCGTAAAATCCATGTTCAAGCACTTCAGGTTCTTAAAGAACGCCATTGCCGACCAGCTCCAGTTCAACAAGCAGCAGCAGCAGCCGTACAGCCCATATTGCCAAAGATCCATTCACAACAATGCCGCATTCCTCGACCACCAACCCGTGTGGCGGCCGCAGCGGGGCCTCCCCGAGAGCGCTGTCACCGTCCTCCGGGCGTGGCTCTTCGAACACTTCCTCCATCCTTATCCTACGGACACCGACAAGCTCATGCTAGCCAATCAGACAGGTTTGTCGCGGAGTCAGGTATCGAACTGGTTTATCAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGCTTGAAACAAGGCAAGCTCAGAAATCTCAGCAGAGAGAACCCAATGGCAATGCCTTAAACAACGATACCACAAACGAATCCTTGAAACAAGACCACAACAACAATAATGCTAATGCATCTTCTTCAAACCACGACGACGACCACCACCCAGTACTGGACTTGTCCAACCCAAATATCTTTCCATCCCACCACCCCCACGCGGCTGCCGGAGCTGCCACCCTTGGTGGTGGCGGCGGCACCGTTTTCTTAACTCTCGGCCTCCACCAGAATCATGGCCACAGCGGCATTGCCCTCTCGGAGCCGTTCCCGATCAATACAGCTCAGCATTTTAACCTTGGGTTAGAGGCCAACGGTGAAGGGTTTGTAAACGAGTGGTTTTGA 1473 53.77 MAEGFEVYHVPQQSRRDKLRVGGATAHPHAHNNTNNFHIAATATGNLLPLYHHDPSSFSDLLPQDFHNNSNPLLPPFPSSYPAAAALLPDHHQPLSLELNLQQQRYGAAVPPIFSPTPIHDSSIPLAGYASILKASRFLRPAQQLLEDLFDYAAGANVNAKLPPDSAILVDPLLETLGGDVAAAAADHDPISCDDATEGRRKKSRLISMLDEVYRRYKQYYQQMQAVVTTFEYVAGLGNAAPYVNLAVKSMFKHFRFLKNAIADQLQFNKQQQQPYSPYCQRSIHNNAAFLDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQQREPNGNALNNDTTNESLKQDHNNNNANASSSNHDDDHHPVLDLSNPNIFPSHHPHAAAGAATLGGGGGTVFLTLGLHQNHGHSGIALSEPFPINTAQHFNLGLEANGEGFVNEWF 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10817069 10822386 + MC01g0411 Mch1g0672 675564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0672 490 MobiDBLite consensus disorder prediction 368 428 - -
Mch1g0672 490 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 400 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch1g0672 490 SMART prehox3 127 264 IPR006563 -
Mch1g0672 490 SMART HOX_1 297 361 IPR001356 GO:0003677(InterPro)
Mch1g0672 490 Pfam Associated with HOX 133 263 IPR006563 -
Mch1g0672 490 CDD homeodomain 297 358 IPR001356 GO:0003677(InterPro)
Mch1g0672 490 Gene3D - 300 362 - -
Mch1g0672 490 SUPERFAMILY Homeodomain-like 299 364 IPR009057 -
Mch1g0672 490 FunFam BEL1-like homeodomain protein 9 300 362 - -
Mch1g0672 490 Pfam Homeobox KN domain 314 353 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g0672 490 ProSiteProfiles 'Homeobox' domain profile. 294 357 IPR001356 GO:0003677(InterPro)
Mch1g0672 490 MobiDBLite consensus disorder prediction 368 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0672 Mch-Chr1:10817069 Mch3g0581 Mch-Chr3:10113997 4.35E-70 dispersed
Mch1g0672 Mch-Chr1:10817069 Mch5g1880 Mch-Chr5:18907803 1.80E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42683 PF07526 POX 1.80E-35 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0672 - - - 0.0