Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0714 ATGGCCGCTCTCTCTCTCCTCTGCTTGTTCTCCTCTTTCTTCTCCCTCTTCCTCCTCTCTCACGCCCGCATCCCCGGCGTCTACTCCGGCGGCCCCTGGCAGGACGCCCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGAACCATGGGTGGTGCGTGTGGGTACGGGAATCTCTACAGCCAGGGCTACGGAGTCAACACCGCCGCGCTCAGCACCGCTCTATTCAACAATGGCTTCAGCTGCGGCGCCTGCTTCGAGATCAAGTGCGCTAATGACCCCAACTGGTGCCATCCCGGCAGCCCTTCCATCTTCGTCACCGCCACCAATTTCTGCCCTCCCAATTTCGCCCTTCCCAACGACAATGGCGGCTGGTGCAACCCTCCTCGCACTCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAATACCGCGCCGGAATCGTCCCCGTCGCTTACCGCCGAGTGGCATGTAGGAAAGAAGGGGGAATCAGGTTCACAATCAACGGCTTCCGTTACTTCAACTTGGTTTTGATCAGCAACGTGGCGGGTGCAGGGGACATCGTGAGGGTGAGCGTGAAAGGATCCAACACCGAGTGGATGAGCATGAGCCGTAACTGGGGGCAAAACTGGCAATCCAACGCGGTTTTGGTGGGTCAGTCCCTCTCCTTCCGGGTCACGGGCAGTGACCGTCGCACCTCCACTTCATGGAACGTGGCGCCATCTAATTGGCAGTTCGGGCAGACCTTCACGGGCAAGAATTTCCGCGTCTGA 780 60.0 MAALSLLCLFSSFFSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPNWCHPGSPSIFVTATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKEGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVKGSNTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11069378 11071653 + MC01g0447 Mch1g0714 675606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0714 259 Gene3D - 21 161 IPR036908 -
Mch1g0714 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Mch1g0714 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Mch1g0714 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Mch1g0714 259 CDD DPBB_EXPA_N 32 160 - -
Mch1g0714 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Mch1g0714 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Mch1g0714 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Mch1g0714 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Mch1g0714 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Mch1g0714 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Mch1g0714 259 PANTHER EXPANSIN-A15 11 257 IPR002963 GO:0009664(InterPro)
Mch1g0714 259 FunFam Expansin 165 257 - -
Mch1g0714 259 FunFam Expansin 22 161 - -
Mch1g0714 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Mch1g0714 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Mch1g0714 259 Gene3D - 165 257 IPR036749 -
Mch1g0714 259 SMART dpbb_1 68 155 IPR007112 -
Mch1g0714 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0714 Mch-Chr1:11069378 Mch9g2116 Mch-Chr9:22063783 8.33E-130 dispersed
Mch10g1475 Mch-Chr10:14704034 Mch1g0714 Mch-Chr1:11069378 3.38E-97 transposed
Mch1g0714 Mch-Chr1:11069378 Mch2g0893 Mch-Chr2:6077979 2.29E-173 wgd
Mch1g0714 Mch-Chr1:11069378 Mch3g0241 Mch-Chr3:3356087 5.36E-170 wgd
Mch1g0714 Mch-Chr1:11069378 Mch4g2162 Mch-Chr4:23468771 5.80E-159 wgd
Mch1g0714 Mch-Chr1:11069378 Mch9g1554 Mch-Chr9:17825037 3.01E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0714 - - - 0.0