Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0729 ATGGTGTTCCCCTCCATTCCATCTTATCTTGATCCAACCCATCAATGGCATCAGCAAGCGGCGGCTGCCCATCAATCCGGCAGTGGTATCACCGGAGCCACTAGTTTTCAGCTCCTTTCGCACCCGTTGCCGTTGCCGCCGCCGCCGCGAGCTGGCAGCGGAGCAGGGTCGGGCACGGTAACGGTCAGGCCTGGGTCGATGGCGGATCGGGCCCGAATGGCGAACCTGCCGGCGCCGGAGACGGCGCTGAAGTGCCCAAGATGTGAATCAACAAACACTAAATTTTGTTACTTCAATAATTACAGCCTGTCTCAACCCCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGCGCTCTCCGGAGCGTCCCCGTCGGCGGCGGCTACCGCCGGAATAATAAAAGAAACAAAAGTAGTAGCTCTAAATCTCCGGTTAACTCTCAATGCCAACCTAATTCTGAGCTTTCAGCAGGAGATCAGGCCATGAGATTAAATTACAGAGCCATTTCCACCCCAAATGAAGAAGCTGGAGATTCAACTCATCCCATTGGGATCTCCAACCTTTTAGGGTTTGATCAAATGATCCAATGGCGTCCGCAGCTTCAGCTTCAGCACACGCAGCTGTCGCCGTTGTTGTCGACGTCGTCAGCTCGGTTGCTCGGAAATGGCACCAACGTATCGTCGAGCTATAACATCGGGCAGATTCAGAAGAAGATGGAAGCGACGAAAATGGAAGAAAATGGACAACAAGTTAATGATCAGGGGAAGCCATTTTGGGGAGTTCTTGCAGGAAATAATGATCGCCATTACTGGAGTACTGGTTTTAATCCTCCATCTTCTTCCCATTCACAAGTATGA 867 52.6 MVFPSIPSYLDPTHQWHQQAAAAHQSGSGITGATSFQLLSHPLPLPPPPRAGSGAGSGTVTVRPGSMADRARMANLPAPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRNKSSSSKSPVNSQCQPNSELSAGDQAMRLNYRAISTPNEEAGDSTHPIGISNLLGFDQMIQWRPQLQLQHTQLSPLLSTSSARLLGNGTNVSSSYNIGQIQKKMEATKMEENGQQVNDQGKPFWGVLAGNNDRHYWSTGFNPPSSSHSQV 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11160266 11162369 - MC01g0461 Mch1g0729 675621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0729 288 MobiDBLite consensus disorder prediction 135 157 - -
Mch1g0729 288 MobiDBLite consensus disorder prediction 127 157 - -
Mch1g0729 288 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g0729 288 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g0729 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 72 239 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0729 288 Pfam Dof domain, zinc finger 82 137 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0729 Mch-Chr1:11160266 Mch2g0976 Mch-Chr2:6608065 1.32E-30 dispersed
Mch1g0729 Mch-Chr1:11160266 Mch2g0909 Mch-Chr2:6180463 9.24E-43 wgd
Mch1g0729 Mch-Chr1:11160266 Mch4g2138 Mch-Chr4:23362067 1.10E-45 wgd
Mch1g0729 Mch-Chr1:11160266 Mch5g1836 Mch-Chr5:18631446 6.72E-48 wgd
Mch1g0729 Mch-Chr1:11160266 Mch9g1562 Mch-Chr9:17923634 3.17E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42686 PF02701 zf-Dof 4.10E-31 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0729 - - - 0.0