Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0739 ATGACGGGCATGGGCGTGAACATAACCTCCATTAAAACCGCCTCCGATGGCGTCTGGCAAGGCGATAACCCTCTCCATTTCGCCTTCCCTCTCTTAATTCTTCAGTCCACTTTGATCCTCCTCGTCACCCGATTCCTCACTCTCCTCCTCAAACCCCTTCGCCAGCCCAAAGTCACCGCTGAAATTCTCGGCGGGATTCTGCTGGGGCCGTCCGCTTCTGGAAGGAGCAAGGCGTATTTGGATCTCGTTTTTCCTCCGTGGAGCACTCCGATTCTCGAATCCGTCGCCAGCATCGGTTTGCTCTTCTTTCTGTTTCTCGTCGGCCTCGAACTCGATTTCTCCTCCATTCGCCGCGGCGGAAGGAGGGCTTTCGGCATAGCCTTCGCCGGCATTTCCGTCACCTTCCTCGCTGGCGTCGGCATCACCTCCGTCTTCCGCAGCACCGTCGACGGCGCCGATCAGGTCGGCTACGGCCAGTTGCTCGTCTTCATGGGCGTCGCTCTCTCCATCACCGCCTTCCCCGTCCTCGCCCGCATTCTCGCCGAGCTCAAACTCCTCACCACTCACGTCGGAGAGACCGCCGTCGCCGCCGCCGCTTTCAACGACGTCGCCGCCTGGATTCTACTCGCCCTCGCCGTCGCGCTCACTGGCGGAGGCGGAGGAGGCAGTGGGGCCCAAGGGAGCCTGTTGGTTTCCGCGTGGGTCCTACTTTCGGGAGCCGGGTTTGTGGTTTTCATGATGGTAGCGATCCGACCCGCGATGGACCGGGTCGCCCGACGCTGCTCGCACGGGCACAACTCCGCCGACGATGCCTATATTTGTTTGACCCTAATCGGAGTTATGGTTTCGGGTTTCGTGACGGATCTGATCGGAATCCATTCGATTTTCGGAGGGTTCATATTCGGGTTGACGATTCCGAAAGGTGGGAGGTTCGCGGAGAGATTGATTGGGAGGATTGAGGATTTCGTTTCGGATCTGCTTCTTCCGCTGTACTTCGCATCGAGCGGGTTGAAGACGGACATAGCGAAGATCCGCGGCGGGAGGGCGTGGGGGCTGGTGGCGCTGGTGACGTTGACGGCCTGCGCCGGAAAGATTCTGGCGACATTTGCGGTGGCGATGGCGTTTCTGATGCCGGCGAGAGAATCGCTGACATTGGGCCTCCTTATGAACACAAAGGGCTTGGTGGAACTCATCGTCCTCAATATCGGCAAGGAGAAGAAGGTTCTGAATGATGAAGTATTCGCCATTTTAGTGCTAATGGCGCTCTTCAATACTTTCATCACCACCCCTTCTGTCATGGCGGTTTACAAGCCGGCCCACGGCGTCTCCACCCGAACCCACCGGAAGCTCTGCGACCTCTCCTCCTCCGCCGCCGCCGACGGCTGCAAGGTGGACGAACTCCGAATCTTGGGTTGCGTCCATGGACCCGGGAATGTACCCTCATTAATCAACTTAATCGATTCAACTCGCAGCACCAAAAACTGTTCGCTCAAGCTTTTCGCCGTGCACCTCGTGGAGCTCACCGAGCGGCCCTCCTCCATTATTATGGTCCACCGAGCTCGCAAGAATGGGTTCCCTTGGTTCCGCTTTCGCAAAGGCGAATGGCACGCCCAAATGGTCGCTGCGTTTCAGTCCTATAGCCAATTGGGTCGGGTCAGGGTCCGACCCACTACCACCATCTCTTCCCTATCCACCATGCACGAAGATGTCTACCACGTGGCGGAAGATAAGAGAGTGGCCTTGATCCTCTTGCCGTTCCACAAGAATTGGAGGGCTGCCGGCGGGGACGCGGCGGCGCCGGAGGATATGGGCCATGGCTGGCGAGTGATGAACCAGAGGGTGTTGGAGAACGCGCCCTGTTCAGTCGCGGTTCTTGTGGACCGTGGATTTGGGGCCCATGCTACTGGGCCCATTTTCAATCTGGCCCAACAGATTTGTGTCATCTTTTGTGGTGGGCCCGACGATCGTGAGGCCCTAGAGCTTGGCCGGCGAATGGCGGCGCATCCGGCGGTCAAGGTGACGGTGGTCAGGTTTCGGCCGGTGGAAGGGGTGGAGGGTCATAATGTCATTTTGCAACCAATGCCTTCAGAATCCGGACTCGGAGACAGCAGCTATAACTCCGAGCTAGATGACATAGCAATGGCAGAATTCAAAACCAAATGGGGTGGAGCTGTTGAGTACATAGAGAAGGAGGCCCACGACATCGTTGAAGGGGTGGTAACCATCGGACAAGAAGGCAGTTACGATCTAATCGTGGTGGGAAGGGGTCAGTTTCCATCGACCGTGGTGCCTAAACTAGCGGACCGCCCAGCAGAGCACACCGAGTTGGGGCCGATAGGCAGTATATTGGCCGAGTCGAACTGGGGAATAGTATCTTCAGTACTGGTAGTTCAACAGTATAAAGGATAA 2409 57.41 MTGMGVNITSIKTASDGVWQGDNPLHFAFPLLILQSTLILLVTRFLTLLLKPLRQPKVTAEILGGILLGPSASGRSKAYLDLVFPPWSTPILESVASIGLLFFLFLVGLELDFSSIRRGGRRAFGIAFAGISVTFLAGVGITSVFRSTVDGADQVGYGQLLVFMGVALSITAFPVLARILAELKLLTTHVGETAVAAAAFNDVAAWILLALAVALTGGGGGGSGAQGSLLVSAWVLLSGAGFVVFMMVAIRPAMDRVARRCSHGHNSADDAYICLTLIGVMVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIGRIEDFVSDLLLPLYFASSGLKTDIAKIRGGRAWGLVALVTLTACAGKILATFAVAMAFLMPARESLTLGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFNTFITTPSVMAVYKPAHGVSTRTHRKLCDLSSSAAADGCKVDELRILGCVHGPGNVPSLINLIDSTRSTKNCSLKLFAVHLVELTERPSSIIMVHRARKNGFPWFRFRKGEWHAQMVAAFQSYSQLGRVRVRPTTTISSLSTMHEDVYHVAEDKRVALILLPFHKNWRAAGGDAAAPEDMGHGWRVMNQRVLENAPCSVAVLVDRGFGAHATGPIFNLAQQICVIFCGGPDDREALELGRRMAAHPAVKVTVVRFRPVEGVEGHNVILQPMPSESGLGDSSYNSELDDIAMAEFKTKWGGAVEYIEKEAHDIVEGVVTIGQEGSYDLIVVGRGQFPSTVVPKLADRPAEHTELGPIGSILAESNWGIVSSVLVVQQYKG 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11238311 11247124 + MC01g0471 Mch1g0739 675631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0739 802 Gene3D - 31 441 IPR038770 -
Mch1g0739 802 FunFam Cation/H(+) antiporter 15 31 443 - -
Mch1g0739 802 PANTHER CATION/H + ANTIPORTER 12 801 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Mch1g0739 802 Pfam Sodium/hydrogen exchanger family 42 432 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0739 K26731 - - csv:101207589 1093.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0739 Mch-Chr1:11238311 Mch2g1588 Mch-Chr2:12778493 1.19E-198 dispersed
Mch1g0737 Mch-Chr1:11227541 Mch1g0739 Mch-Chr1:11238311 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g1588 . 10 832 Antiporter Super Family AT2G13620 70.7 0.0e+00 1142.9
Mch10g0853 . 5 783 Antiporter Super Family AT2G13620 50.3 3.4e-214 741.9
Mch1g0737 . 75 841 Antiporter Super Family AT3G53720 68.2 1.6e-285 978.8
Mch1g0739 . 78 800 Antiporter Super Family AT3G53720 63.5 3.9e-252 867.8
Mch10g0853 . 84 783 Antiporter Super Family AT3G53720 51.3 6.7e-188 654.4
Mch10g0855 . 129 819 Antiporter Super Family AT3G53720 50.3 3.8e-183 638.6
Mch10g0853 . 1 797 Antiporter Super Family AT5G41610 68.5 7.6e-307 1049.7
Mch10g0855 . 47 822 Antiporter Super Family AT5G41610 69.0 6.6e-303 1036.6
Mch1g0737 . 8 816 Antiporter Super Family AT5G41610 51.9 6.2e-208 721.1
Mch10g0855 . 52 820 Antiporter Super Family AT4G23700 66.9 2.4e-292 1001.5
Mch10g0853 . 10 800 Antiporter Super Family AT4G23700 63.1 7.7e-283 969.9
Mch10g0853 . 1 783 Antiporter Super Family AT3G17630 63.2 6.4e-274 940.3
Mch10g0855 . 50 820 Antiporter Super Family AT3G17630 63.9 2.4e-273 938.3
Mch1g0737 . 8 817 Antiporter Super Family AT3G17630 51.2 1.7e-205 713.0
Mch1g0739 . 11 800 Antiporter Super Family AT3G17630 50.1 4.0e-191 665.2
Mch10g0855 . 54 822 Antiporter Super Family AT1G64170 57.9 4.0e-239 824.7
Mch10g0853 . 4 788 Antiporter Super Family AT1G64170 57.5 4.9e-237 817.8
Mch2g1588 . 10 832 Antiporter Super Family AT2G13620 70.7 0.0e+00 1142.9
Mch10g0853 . 5 783 Antiporter Super Family AT2G13620 50.3 3.4e-214 741.9
Mch10g0855 . 54 822 Antiporter Super Family AT1G64170 57.9 4.0e-239 824.7
Mch10g0853 . 4 788 Antiporter Super Family AT1G64170 57.5 4.9e-237 817.8
Mch10g0855 . 52 820 Antiporter Super Family AT4G23700 66.9 2.4e-292 1001.5
Mch10g0853 . 10 800 Antiporter Super Family AT4G23700 63.1 7.7e-283 969.9
Mch10g0853 . 1 797 Antiporter Super Family AT5G41610 68.5 7.6e-307 1049.7
Mch10g0855 . 47 822 Antiporter Super Family AT5G41610 69.0 6.6e-303 1036.6
Mch1g0737 . 8 816 Antiporter Super Family AT5G41610 51.9 6.2e-208 721.1
Mch10g0853 . 1 783 Antiporter Super Family AT3G17630 63.2 6.4e-274 940.3
Mch10g0855 . 50 820 Antiporter Super Family AT3G17630 63.9 2.4e-273 938.3
Mch1g0737 . 8 817 Antiporter Super Family AT3G17630 51.2 1.7e-205 713.0
Mch1g0739 . 11 800 Antiporter Super Family AT3G17630 50.1 4.0e-191 665.2
Mch1g0737 . 75 841 Antiporter Super Family AT3G53720 68.2 1.6e-285 978.8
Mch1g0739 . 78 800 Antiporter Super Family AT3G53720 63.5 3.9e-252 867.8
Mch10g0853 . 84 783 Antiporter Super Family AT3G53720 51.3 6.7e-188 654.4
Mch10g0855 . 129 819 Antiporter Super Family AT3G53720 50.3 3.8e-183 638.6
Mch9g0568 . 57 801 Antiporter Super Family AT3G52080 54.5 8.8e-231 797.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43