Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0756 ATGGGGAACGCCCATGGCCACCGCAAACATTGTAACCATGGCGTAATTACCTCTCCACCCACTAACGCTCACTCTCCTTTCCATAAATATCCCCAATCCGCCCGCGATTCTCAAACTTCGAGCTCCACGCCCAATATGGAGTCCTTGCCCTACGCCCACGTTGATGCCACCCTCCGCGCCCTCGCGGCTCAGGCCGAAGGATTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGCGTCACTAACTTAGCAGATGATGGTCCAGGATCGCTCAGGTTCGGGTGTCGTAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTACATATCTGAGTGTGTCATCTTATAAGACCATAGATGGCCGGGGCCAAAGGATAAAACTTACGGGGAAGGGGTTGAGGTTGAAGGAGTGTGAGCATGTGATTGTTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTGGACGGAATTCAAATTAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATCGATATCACCCGGGGAAGCACAGATATCACTATTTCTAGGTGTTACTTCGCACAGCATGACAAGACAATGCTCATAGGCGCAGATCCCTCTCATGTTGGCGACCGATGTATCCGTGTCACCATTCACCACTGTTTTTTTGACGGTACACGACAACGGCATCCACGAGTTAGATTTGCTCAAGTACATCTATACAATAACTACACCAGAAACTGGGGAATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATATTCTCTCAGTTCAACATATACGAAGCAGGACAGAAAAAGTTGGCGTTTAAATATCTAACTGAAAAGGCAGCAGACAAGGAAGAGCCCTCAAGTGGATGCATATGGTCTGATGGAGACTTGTTTGTAAGTGGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGCCCACAGCTTGTTCCATCCCTCACAACATTACACTGCTTGGACTGTGGAACCTCCCTCAGATTCTCTGAAACAGATTCTCCAACACTGTACTGGATGCCAAAACATCCCAAGGCCGGCAGATCAGCCACTGGTACCTTAG 1131 48.19 MGNAHGHRKHCNHGVITSPPTNAHSPFHKYPQSARDSQTSSSTPNMESLPYAHVDATLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAQVHLYNNYTRNWGIYAVCASVESQIFSQFNIYEAGQKKLAFKYLTEKAADKEEPSSGCIWSDGDLFVSGTQSGLLAATAAHSLFHPSQHYTAWTVEPPSDSLKQILQHCTGCQNIPRPADQPLVP 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11352601 11356790 - MC01g0488 Mch1g0756 675648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0756 376 ProSiteProfiles Zinc finger integrase-type profile. 323 364 IPR003308 GO:0008270(InterPro)
Mch1g0756 376 Gene3D - 51 359 IPR012334 -
Mch1g0756 376 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Mch1g0756 376 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Mch1g0756 376 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Mch1g0756 376 MobiDBLite consensus disorder prediction 1 48 - -
Mch1g0756 376 SUPERFAMILY Pectin lyase-like 64 371 IPR011050 -
Mch1g0756 376 PANTHER PECTATE LYASE 18-RELATED 57 351 IPR045032 GO:0030570(InterPro)
Mch1g0756 376 Pfam Pectate lyase 120 281 IPR002022 -
Mch1g0756 376 SMART amb_all 76 289 IPR002022 -
Mch1g0756 376 MobiDBLite consensus disorder prediction 15 48 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0756 Mch-Chr1:11352601 Mch4g2019 Mch-Chr4:22498721 2.44E-46 dispersed
Mch1g0756 Mch-Chr1:11352601 Mch9g1816 Mch-Chr9:19952755 1.83E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0756 K01728 - csv:101219724 691.419