Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0773 ATGAATGCTAATGCCGACAGGCACCATGAGTTAAAAGAACCAAATCACCACGTACAGGATAGAAATGGAAGTGTAAACGATGGTGTAACTGGCAGGGAACAGAGCCCGCTTGAGGAAAATGAGTTGAAAGACAATGGATTAACTAGAAATGCAGAAGGTGGACGAAAATCTGCAATTCAAGCCCATGACATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCGATGGTCTGCTGGGAGAGATTTCTACATCTTAGATCTCTTAAGGTTTTGCTTGTAGAAAATGATGACTCCACTCGGCATCTAGTCACTGCACTGCTTCGTAACTGCAGTTATGAAGTTATTGCGGCTGCCAATGGACTACACGCATGGAAGTTGCTAGAAGATCTGAAAAATCACATAGATCTCGTATTAACAGAAGTGGTCATGCCTTGCTTATCTGGCATCGGTCTTTTATGCAAGATTATGAGCCATAAAACACGAAAGAATATACCCGTAATCATGATGTCTTCTCATGACTCGATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAGAACCTTTGGCAACATGTTTGGAGAAGATGTCATAGTTCTAGCGGTAGTGGAAGTGAAAGTGGCACACAGACTCAAAAATCTGTGAAGTCGAAAAGTGTTGAAAAAACAAACAACAACTCTGGAAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAATATTGGGGATGGAAGTGACGATGGCAGTGGTACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCTTCAGCATGGGATCAAAAACGTGAATGTCCTGATAGTACCTGTGCTCAAGTTGTCCACTCAAATGCCGATGCATTTACTAATAATGTGCTTCCTGTTTTGACAGCAGAGTGCCACCTGCAGAAAAAGCAATTTGAAACTGTTACCATGGGTAAGGTGGAATTAGGCATGCACAGAAATCTGGATTTACAACTTGAACTCTCGACAGAACGTCCAACCAAACATGTTGGAAGAAAACAGAATATTATGCTTGAGATAGGGTCCAGTGGATTTAATGACCAGTTAAATAAGGGACATCTTGATCTCAACTCTGAAAGCCCATCCAGCAAGCTTAATTATGAACAAACAGCTGTTACTGGTCTTGCTACCGATCTCACTGATTCTAAGATGGAAGTCACGGTGTTTGAGGCAGCAAGCAACCATCCCAATATCACAGACATTAAGGATAAAGATGTTACAGATTCAGAAGAGTTTCCATCCCTTGAGCTCGGATTGAAAAGGCTTAGAGGAGTTCAAACGGCAGGAAAAGCAGTCCAAGATGAGCGGAATGTTTTGAGACGCTCAGACTCTTCAGCTTTTTCTAGGTACAATGCTGCCTCAAATTCTAACAAGGCTCCAACTGGGAATGCTGGAAGTAATTCTCCGCCTGTTAATGGCTTAGAAGTTACAAACCAAGAGAATATGCAAGATATCCGATCTCATTCAAGTAGTAATCCTCCCAATCAGTGCTCAAATGGAGATAGCAATAATATTGACATGGGTTCCACTACTAATAATGCATTTTCAAAATCCTTTGTTACTAATAACAAGTCAGCAATGACATCAACAGTCAACTGTCTGCACCCGTCAGCAGCTTTCCAATCTGTTAAAAATGACACACTATCTGTTCCTCAGCAAGCTGATAATGTCAATAATGTGGCAAATACAACTATGCAAGCCCAGTCAAATTGTGTGCACAGCGAATCTCAAATTCTGCAACTTTGTCACCCGTATGATCCCAATCATCAGCTTGTCCACAATATTCAACAAGTGTCATTTGAGCATAATGATTTTTCATTAAAGAAAATATCAGCAGCTGCCACGCATTGTGGGTCAACCAATGTGTTAAATGGGCCTGTGGAAGGTAATGCAGCAAATTATAGTGTGAATGGGAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGCAGCACGGCAGTAAATGCTGGAGGGCTAAATATGGAAAGTGATAATGGAATAGGTGGGAAAAGCCGAAGTGGGGATGCCAGTGGAAGCGGCAGTGGAAACAAAATGGACGAAAACAGAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAACGATGCTTCCGTAAAAAGGTCCGTTACCAAAGCCGAAAAAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAATTTGTGAGACAAAACACAAGCGAAAACACAAGCAATGGGGGAGATGGCTAA 2346 42.41 MNANADRHHELKEPNHHVQDRNGSVNDGVTGREQSPLEENELKDNGLTRNAEGGRKSAIQAHDILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKLLEDLKNHIDLVLTEVVMPCLSGIGLLCKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKTNNNSGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRECPDSTCAQVVHSNADAFTNNVLPVLTAECHLQKKQFETVTMGKVELGMHRNLDLQLELSTERPTKHVGRKQNIMLEIGSSGFNDQLNKGHLDLNSESPSSKLNYEQTAVTGLATDLTDSKMEVTVFEAASNHPNITDIKDKDVTDSEEFPSLELGLKRLRGVQTAGKAVQDERNVLRRSDSSAFSRYNAASNSNKAPTGNAGSNSPPVNGLEVTNQENMQDIRSHSSSNPPNQCSNGDSNNIDMGSTTNNAFSKSFVTNNKSAMTSTVNCLHPSAAFQSVKNDTLSVPQQADNVNNVANTTMQAQSNCVHSESQILQLCHPYDPNHQLVHNIQQVSFEHNDFSLKKISAAATHCGSTNVLNGPVEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGGKSRSGDASGSGSGNKMDENRVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNGGDG 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11448255 11457491 - MC01g_new0273 Mch1g0773 675665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0773 781 ProSiteProfiles CCT domain profile. 727 769 IPR010402 GO:0005515(InterPro)
Mch1g0773 781 MobiDBLite consensus disorder prediction 667 693 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 737 752 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 721 736 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 700 720 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 34 50 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 213 290 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 1 20 - -
Mch1g0773 781 FunFam Two-component response regulator-like PRR37 89 247 - -
Mch1g0773 781 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160(InterPro)
Mch1g0773 781 Gene3D - 88 254 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 213 240 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 764 781 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 457 540 - -
Mch1g0773 781 SUPERFAMILY CheY-like 87 213 IPR011006 -
Mch1g0773 781 CDD psREC_PRR 91 194 - -
Mch1g0773 781 SMART REC_2 89 204 IPR001789 GO:0000160(InterPro)
Mch1g0773 781 MobiDBLite consensus disorder prediction 1 51 - -
Mch1g0773 781 Pfam CCT motif 727 769 IPR010402 GO:0005515(InterPro)
Mch1g0773 781 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160(InterPro)
Mch1g0773 781 MobiDBLite consensus disorder prediction 261 276 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 667 781 - -
Mch1g0773 781 MobiDBLite consensus disorder prediction 474 540 - -
Mch1g0773 781 PANTHER TWO-COMPONENT RESPONSE REGULATOR 75 277 IPR045279 GO:0009736(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0773 K12129 - - csv:101210765 1269.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0773 Mch-Chr1:11448255 Mch3g1725 Mch-Chr3:18746928 4.24E-24 dispersed
Mch9g1959 Mch-Chr9:20987220 Mch1g0773 Mch-Chr1:11448255 1.13E-06 dispersed
Mch6g1811 Mch-Chr6:20717752 Mch1g0773 Mch-Chr1:11448255 4.49E-53 transposed
Mch4g0873 Mch-Chr4:6334485 Mch1g0773 Mch-Chr1:11448255 4.94E-07 transposed
Mch1g0773 Mch-Chr1:11448255 Mch2g0953 Mch-Chr2:6424818 2.92E-06 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0075 . 52 255 Response Regulator Gene Family AT3G16857 53.1 1.6e-54 211.1
Mch7g1214 . 25 284 Response Regulator Gene Family AT4G31920 55.0 1.7e-71 267.3
Mch5g0747 . 16 293 Response Regulator Gene Family AT4G31920 51.6 1.6e-69 260.8
Mch8g0075 . 11 258 Response Regulator Gene Family AT4G31920 51.8 3.7e-63 239.6
Mch5g0747 . 99 262 Response Regulator Gene Family AT1G67710 54.7 8.0e-40 161.8
Mch11g0515 . 93 256 Response Regulator Gene Family AT1G67710 54.1 8.0e-40 161.8
Mch7g1214 . 108 271 Response Regulator Gene Family AT1G67710 52.4 3.4e-38 156.4
Mch8g3032 . 17 352 Response Regulator Gene Family AT2G25180 55.3 2.2e-85 313.5
Mch6g0639 . 16 372 Response Regulator Gene Family AT2G25180 50.7 1.1e-84 311.2
Mch8g0075 . 11 255 Response Regulator Gene Family AT2G25180 55.1 2.4e-68 256.9
Mch7g1214 . 88 319 Response Regulator Gene Family AT2G01760 50.6 1.2e-53 207.2
Mch8g0075 . 72 258 Response Regulator Gene Family AT2G01760 50.5 1.5e-45 180.3
Mch8g3032 . 79 277 Response Regulator Gene Family AT2G01760 51.9 6.3e-39 158.3
Mch7g1214 . 27 300 Response Regulator Gene Family AT5G58080 51.3 2.3e-69 260.4
Mch8g0075 . 9 257 Response Regulator Gene Family AT5G58080 51.2 4.3e-63 239.6
Mch7g1214 . 26 251 Response Regulator Gene Family AT4G16110 67.5 3.1e-80 296.6
Mch5g0747 . 18 242 Response Regulator Gene Family AT4G16110 67.4 1.5e-79 294.3
Mch11g0515 . 11 234 Response Regulator Gene Family AT4G16110 57.9 1.1e-61 235.0
Mch8g0075 . 11 234 Response Regulator Gene Family AT4G16110 53.8 3.3e-58 223.4
Mch8g3032 . 11 263 Response Regulator Gene Family AT4G16110 51.7 5.3e-56 216.1
Mch6g0639 . 17 237 Response Regulator Gene Family AT4G16110 52.7 2.5e-50 197.2
Mch9g2202 . 12 164 Response Regulator Gene Family AT3G48100 65.8 1.4e-51 199.5
Mch6g0185 . 2 146 Response Regulator Gene Family AT3G48100 72.1 7.1e-51 197.2
Mch4g1566 . 11 147 Response Regulator Gene Family AT3G48100 59.9 5.6e-40 161.0
Mch1g0440 . 61 208 Response Regulator Gene Family AT3G48100 57.4 9.6e-40 160.2
Mch4g1781 . 1 159 Response Regulator Gene Family AT3G48100 51.9 3.6e-39 158.3
Mch9g2202 . 1 193 Response Regulator Gene Family AT1G59940 60.8 2.8e-55 212.6
Mch6g0185 . 1 131 Response Regulator Gene Family AT1G59940 69.5 9.8e-48 187.6
Mch4g1566 . 5 148 Response Regulator Gene Family AT1G59940 60.4 8.9e-41 164.5
Mch4g1781 . 17 156 Response Regulator Gene Family AT1G59940 58.9 1.9e-38 156.8
Mch1g0440 . 62 206 Response Regulator Gene Family AT1G59940 57.2 2.4e-38 156.4
Mch9g1380 . 17 144 Response Regulator Gene Family AT1G59940 63.3 2.4e-38 156.4
Mch9g2202 . 16 185 Response Regulator Gene Family AT1G10470 66.5 4.5e-53 204.9
Mch6g0185 . 1 138 Response Regulator Gene Family AT1G10470 68.8 4.4e-48 188.3
Mch4g1566 . 5 148 Response Regulator Gene Family AT1G10470 58.3 4.4e-40 161.8
Mch4g1781 . 17 182 Response Regulator Gene Family AT1G10470 51.8 3.7e-39 158.7
Mch1g0440 . 68 206 Response Regulator Gene Family AT1G10470 61.9 1.1e-38 157.1
Mch9g1380 . 5 144 Response Regulator Gene Family AT1G10470 59.3 5.9e-37 151.4
Mch9g2202 . 12 164 Response Regulator Gene Family AT3G48100 65.8 1.4e-51 199.5
Mch6g0185 . 2 146 Response Regulator Gene Family AT3G48100 72.1 7.1e-51 197.2
Mch4g1566 . 11 147 Response Regulator Gene Family AT3G48100 59.9 5.6e-40 161.0
Mch1g0440 . 61 208 Response Regulator Gene Family AT3G48100 57.4 9.6e-40 160.2
Mch4g1781 . 1 159 Response Regulator Gene Family AT3G48100 51.9 3.6e-39 158.3
Mch6g0185 . 2 134 Response Regulator Gene Family AT5G62920 75.2 4.6e-50 194.5
Mch9g2202 . 25 175 Response Regulator Gene Family AT5G62920 68.2 1.0e-49 193.4
Mch4g1566 . 11 147 Response Regulator Gene Family AT5G62920 59.9 7.4e-40 160.6
Mch4g1781 . 1 154 Response Regulator Gene Family AT5G62920 55.5 4.8e-39 157.9
Mch1g0440 . 63 208 Response Regulator Gene Family AT5G62920 58.2 2.4e-38 155.6
Mch6g0185 . 1 139 Response Regulator Gene Family AT1G19050 71.9 5.1e-50 194.5
Mch9g2202 . 15 185 Response Regulator Gene Family AT1G19050 57.6 1.0e-45 180.3
Mch4g1566 . 9 150 Response Regulator Gene Family AT1G19050 53.5 5.9e-38 154.5
Mch1g0440 . 51 208 Response Regulator Gene Family AT1G19050 51.9 1.0e-37 153.7
Mch4g1781 . 17 148 Response Regulator Gene Family AT1G19050 60.9 5.0e-37 151.4
Mch1g0440 . 59 210 Response Regulator Gene Family AT2G41310 73.7 3.1e-56 215.3
Mch4g1566 . 8 147 Response Regulator Gene Family AT2G41310 69.3 1.9e-50 196.1
Mch4g1781 . 10 155 Response Regulator Gene Family AT2G41310 60.1 2.1e-44 176.0
Mch9g2202 . 25 158 Response Regulator Gene Family AT2G41310 60.3 3.9e-43 171.8
Mch6g0185 . 1 131 Response Regulator Gene Family AT2G41310 59.7 2.6e-39 159.1
Mch9g1380 . 19 144 Response Regulator Gene Family AT2G41310 57.3 3.8e-38 155.2
Mch1g0440 . 59 319 Response Regulator Gene Family AT3G57040 51.3 4.0e-59 224.9
Mch4g1566 . 1 147 Response Regulator Gene Family AT3G57040 70.5 3.6e-52 201.8
Mch9g2202 . 25 158 Response Regulator Gene Family AT3G57040 60.8 5.6e-45 177.9
Mch4g1781 . 13 186 Response Regulator Gene Family AT3G57040 55.3 7.4e-45 177.6
Mch6g0185 . 1 131 Response Regulator Gene Family AT3G57040 61.7 1.7e-41 166.4
Mch9g1380 . 17 144 Response Regulator Gene Family AT3G57040 56.3 5.1e-38 154.8
Mch6g0185 . 1 145 Response Regulator Gene Family AT1G74890 71.7 3.9e-50 194.9
Mch9g2202 . 25 223 Response Regulator Gene Family AT1G74890 56.7 3.1e-47 185.3
Mch1g0440 . 63 206 Response Regulator Gene Family AT1G74890 56.9 7.0e-39 157.5
Mch4g1566 . 7 142 Response Regulator Gene Family AT1G74890 57.4 1.2e-38 156.8
Mch9g1380 . 19 144 Response Regulator Gene Family AT1G74890 60.3 3.8e-37 151.8
Mch9g1380 . 19 151 Response Regulator Gene Family AT2G40670 67.9 5.2e-45 177.6
Mch9g2202 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.9e-39 159.1
Mch6g0185 . 1 131 Response Regulator Gene Family AT2G40670 59.3 1.8e-37 152.5
Mch9g1380 . 19 151 Response Regulator Gene Family AT3G56380 69.4 2.8e-45 178.3
Mch9g2202 . 22 159 Response Regulator Gene Family AT3G56380 53.2 3.6e-40 161.4
Mch1g0440 . 64 208 Response Regulator Gene Family AT3G56380 55.5 6.8e-39 157.1
Mch6g0185 . 1 131 Response Regulator Gene Family AT3G56380 61.2 2.0e-38 155.6
Mch4g1781 . 13 152 Response Regulator Gene Family AT3G56380 57.3 3.4e-38 154.8
Mch4g1566 . 9 150 Response Regulator Gene Family AT3G56380 54.5 8.3e-37 150.2
Mch8g0075 . 52 255 Response Regulator Gene Family AT3G16857 53.1 1.6e-54 211.1
Mch7g1214 . 26 251 Response Regulator Gene Family AT4G16110 67.5 3.1e-80 296.6
Mch5g0747 . 18 242 Response Regulator Gene Family AT4G16110 67.4 1.5e-79 294.3
Mch11g0515 . 11 234 Response Regulator Gene Family AT4G16110 57.9 1.1e-61 235.0
Mch8g0075 . 11 234 Response Regulator Gene Family AT4G16110 53.8 3.3e-58 223.4
Mch8g3032 . 11 263 Response Regulator Gene Family AT4G16110 51.7 5.3e-56 216.1
Mch6g0639 . 17 237 Response Regulator Gene Family AT4G16110 52.7 2.5e-50 197.2
Mch7g1214 . 25 284 Response Regulator Gene Family AT4G31920 55.0 1.7e-71 267.3
Mch5g0747 . 16 293 Response Regulator Gene Family AT4G31920 51.6 1.6e-69 260.8
Mch8g0075 . 11 258 Response Regulator Gene Family AT4G31920 51.8 3.7e-63 239.6
Mch5g0747 . 99 262 Response Regulator Gene Family AT1G67710 54.7 8.0e-40 161.8
Mch11g0515 . 93 256 Response Regulator Gene Family AT1G67710 54.1 8.0e-40 161.8
Mch7g1214 . 108 271 Response Regulator Gene Family AT1G67710 52.4 3.4e-38 156.4
Mch8g3032 . 17 352 Response Regulator Gene Family AT2G25180 55.3 2.2e-85 313.5
Mch6g0639 . 16 372 Response Regulator Gene Family AT2G25180 50.7 1.1e-84 311.2
Mch8g0075 . 11 255 Response Regulator Gene Family AT2G25180 55.1 2.4e-68 256.9
Mch7g1214 . 88 319 Response Regulator Gene Family AT2G01760 50.6 1.2e-53 207.2
Mch8g0075 . 72 258 Response Regulator Gene Family AT2G01760 50.5 1.5e-45 180.3
Mch8g3032 . 79 277 Response Regulator Gene Family AT2G01760 51.9 6.3e-39 158.3
Mch7g1214 . 27 300 Response Regulator Gene Family AT5G58080 51.3 2.3e-69 260.4
Mch8g0075 . 9 257 Response Regulator Gene Family AT5G58080 51.2 4.3e-63 239.6
Mch1g0773 . 68 214 Response Regulator Gene Family AT5G60100 80.3 2.0e-61 233.4
Mch6g1811 . 84 221 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002590 2 9 3 3 2 1 4 1 1 1 1 1 2 1 1 2 1 5 1 1 1 1 1 1 1 1 1 5 1 3 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42689 PF00072 Response_reg 1.90E-20 CL0304 Mch TR