Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0783 ATGCTGGACCTCAACCTCTCGATTCTCTCCGGAGCTTCCGATTTTGTCTCCGGAAATCCGTTCAACTTCTCCGGGACCGGAATCGACAGTCCCGGCTCTTCCTCCGTCGTCAACGCCGACGACGACTCCTCTTCCGTCGCCAATTATGCTTTCACCTACTCCTTCGGCATCCTCAACAAGACTGACGACGACCACCGCCACCGGACCGGCCGGTTCCCCCCCGTCGCCGGCGGGCTGCAGAGGCAATGGCCGGATTCCGACGTGGTTCAGCAACCGTTTCATCCGGTGAAGAAGGGGCGGCGCGGTCCCAAATCCCGGAGCTCGCAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAGCAAGTCTACTTGGGGGGTTTCGATACGGCCCATTCTGCAGCCAGGGCTTACGATCGAGCTGCGATAAAGTTTCGAGGGGTTCACGCTGATATAAATTTCAATATCAGCGACTACAGTGAAGAGATTAAATGTGGATTTGGGGTTTCAATGGCGGATTTGCAGATGAGTAATTTCAGTAAGGAGGAGTTTGTGCATATTCTTCGAAGGCAGAGCACTGGGTTTTCGAGAGGGAGCTCCAAATACAGAGGGGTTACTCTGCACAAGTGTGGCCGATGGGAAGCTCGTATGGGGCAGTTTCTGGGGAAGAAGTACGTGTATCTTGGGCTGTTTGACAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCTATAAAATACAATGGAAGGGAAGCTGTTACCAACTTTGATCAGAGTTCCTATGAGGGAGAGATTTCTATTGAATCTGAAAACCAAGACATGGGTGATATTGACTTGAACTTGGGCATTGCCCCACCTTGTTCATCTGAAGACCAAAAGGACAACCTTAATGGCTGTGCTCCAAATTTCATTGGATTCAAAAACTCAGATTCTGAGAGGAGATGTGGTGTGATGCTTGGAAACCATGCTTCTGTGGCTGTGAGACCACACCCTCCTTGTTTGAGTTGTGCCAATTTCTTTCCTACCTACCAGGAAAGAGCAATGGAGAAGAGAATGGAAATTGAATCCTTACCGAACTGGGGATGGCAGATTCCGAGCCCCTACGGCGGAGCAACTTCAGTGCATTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCTGCCGTTCTTCCGCAGCCATCGTCGGCCCGGCATCTTCTTCCAGCATCGACGTTCTTCTGCCACCCATTACCAACAGTAACACCATAG 1293 50.73 MLDLNLSILSGASDFVSGNPFNFSGTGIDSPGSSSVVNADDDSSSVANYAFTYSFGILNKTDDDHRHRTGRFPPVAGGLQRQWPDSDVVQQPFHPVKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKCGFGVSMADLQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEGEISIESENQDMGDIDLNLGIAPPCSSEDQKDNLNGCAPNFIGFKNSDSERRCGVMLGNHASVAVRPHPPCLSCANFFPTYQERAMEKRMEIESLPNWGWQIPSPYGGATSVHFFSTAASSGFPSSSSSAVLPQPSSARHLLPASTFFCHPLPTVTP 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11506599 11512171 + MC01g0506 Mch1g0783 675675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0783 430 PRINTS Ethylene responsive element binding protein signature 250 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 PRINTS Ethylene responsive element binding protein signature 212 223 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 SUPERFAMILY DNA-binding domain 108 167 IPR016177 GO:0003677(InterPro)
Mch1g0783 430 CDD AP2 210 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 Pfam AP2 domain 109 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 Pfam AP2 domain 210 260 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 70 300 - -
Mch1g0783 430 FunFam AP2-like ethylene-responsive transcription factor 210 270 - -
Mch1g0783 430 Gene3D AP2/ERF domain 210 269 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 ProSiteProfiles AP2/ERF domain profile. 211 268 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 CDD AP2 108 167 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 SMART rav1_2 109 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 SMART rav1_2 211 274 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 ProSiteProfiles AP2/ERF domain profile. 109 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g0783 430 SUPERFAMILY DNA-binding domain 210 269 IPR016177 GO:0003677(InterPro)
Mch1g0783 430 FunFam AP2-like ethylene-responsive transcription factor 108 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0783 Mch-Chr1:11506599 Mch1g1224 Mch-Chr1:14575967 1.12E-99 dispersed
Mch1g0783 Mch-Chr1:11506599 Mch2g0969 Mch-Chr2:6542028 8.20E-119 wgd
Mch1g0783 Mch-Chr1:11506599 Mch5g1789 Mch-Chr5:18324343 2.73E-130 wgd
Mch1g0783 Mch-Chr1:11506599 Mch9g1629 Mch-Chr9:18450309 2.60E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42690 PF00847 AP2 1.40E-10 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0783 K09284 - csv:101211008 560.066