Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0792 CAGATGATGTCTGGTATTGACTTTTGTGCTGTTCCTTCTTCTGTTGGAGAGTTACAAAGCTCTCAGCTTTATCTTCCTCCCAATCCGAACCCGAATCCGAACCCTAACCCTAACCCTAATTCCGATTCTCAGCTCCTTCCTTCTCTCCCCAAGAAGAAGAGAAACTTGCCTGGAAAACCAGATCCAGATGCGGAGGTTATTGCTTTGTCTCCAAACACTCTCATGGCGACCAACAGATTCATCTGTGAGATATGCAACAAAGGATTCCAAAGGGACCAGAACTTGCAGCTCCACAGGAGAGGGCACAACCTGCCATGGAAGCTCCGGCAGAGAAGCAACAAAGAGGTGAAGAAGAAGGTGTATATTTGCCCCGAGAAGTCGTGCGTCCACCACGACGCAGCGAGAGCGCTCGGGGACCTCACCGGAATAAAGAAGCACTTCAGCAGGAAGCACGGGGAAAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAAATATGCTGTTCAATCCGACTGGAAAGCTCACTCCAAGACTTGTGGAACTCGAGAGTACAAGTGTGACTGTGGAACACTCTTTTCCAGGAAAGATAGCTTCATAACTCATAGAGCATTCTGCGATGCTTTGGCTGAAGAAAGTGCGAGGCTGATTTCATCAGTTGCAGCAGCAAATTTAAAACCCAATTTCAAAAATTTTGACCACTTCAATAATAATAACAATAATCTCCTCCCAACGGAACCACCTTCATTATCTGGCTTCCCATTCCCAACCCAAATTCCCTCCTCCAATAATCTCTTCGAAATCCCAAATCGAATATTGGGTTTTACCAACAAAAATGGCTCCAAAAGACACACCAACAATCAAGAGGCGAAGGAAGATGGTTACTTCTCATCCAGCTTCTTCGGCGGCGGCGGCGGGGGCCTGTCGGCGACGGCGCTGCTGCTGAAGGCGGCCCAATTGGGGTCCACAAGAAGCGACCCATTATCGTTCTCAGGGAGCAGCGTGGGAGTGATGATGAGTTCATCATCATCAGCTTCTAATAATAATAATAATAATTCGAAGAATGATAATAACCAAAGCAGAAGCGAGTTGCAGCAGCTGTTTGAGGGCTCCATTAATGGCGGATTGACGAGGGATTTTCTTGGGAGTACTGGCGATGATCATCACAAACAAATTGTTCCGCAGATGGTTCCATTAATGGACCTCACCAAGTTTGCTAACTCCAATATGAATTCGGATCCAATCGGGTCCACCCAATTCATTGCCAATGAT 1266 46.84 QMMSGIDFCAVPSSVGELQSSQLYLPPNPNPNPNPNPNPNSDSQLLPSLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKSCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLISSVAAANLKPNFKNFDHFNNNNNNLLPTEPPSLSGFPFPTQIPSSNNLFEIPNRILGFTNKNGSKRHTNNQEAKEDGYFSSSFFGGGGGGLSATALLLKAAQLGSTRSDPLSFSGSSVGVMMSSSSSASNNNNNNSKNDNNQSRSELQQLFEGSINGGLTRDFLGSTGDDHHKQIVPQMVPLMDLTKFANSNMNSDPIGSTQFIAND 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11567958 11570173 + MC01g0515 Mch1g0792 675684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0792 422 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Mch1g0792 422 SMART c2h2final6 156 176 IPR013087 -
Mch1g0792 422 SMART c2h2final6 121 151 IPR013087 -
Mch1g0792 422 SMART c2h2final6 80 102 IPR013087 -
Mch1g0792 422 Pfam Zinc finger, C2H2 type 80 102 IPR013087 -
Mch1g0792 422 MobiDBLite consensus disorder prediction 26 40 - -
Mch1g0792 422 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 117 151 - -
Mch1g0792 422 Gene3D Classic Zinc Finger 113 204 - -
Mch1g0792 422 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 155 179 - -
Mch1g0792 422 FunFam protein indeterminate-domain 12-like 59 127 - -
Mch1g0792 422 Gene3D Classic Zinc Finger 76 103 - -
Mch1g0792 422 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 389 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch1g0792 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Mch1g0792 422 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 182 219 - -
Mch1g0792 422 MobiDBLite consensus disorder prediction 321 359 - -
Mch1g0792 422 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Mch1g0792 422 SUPERFAMILY beta-beta-alpha zinc fingers 79 176 IPR036236 -
Mch1g0792 422 MobiDBLite consensus disorder prediction 19 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0792 Mch-Chr1:11567958 Mch1g1490 Mch-Chr1:16406121 6.04E-108 dispersed
Mch9g0770 Mch-Chr9:5767274 Mch1g0792 Mch-Chr1:11567958 5.34E-102 transposed
Mch1g0792 Mch-Chr1:11567958 Mch5g1758 Mch-Chr5:18158748 1.19E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42692 PF12171 zf-C2H2_jaz 6.00E-05 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0792 K25870 - csv:101221389 394.815