Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0796 ATGAAGTTTCGATTTCTTCTTTCTAGTTGCTGTTCTGCACGATCGCCGACGGCTATGGAGAATGGCTGCCACGCAGATAGGCAAGACAACGAGGGTTTTCGTATATACTCCTACAACGAGCTTAAATCAGCCACCCGAGGATTTAGTGCGGCGAATAAGGTCGGAGAGGGTGGATTCGGCTCCGTTTACAAGGGCCGGCTTCGGGATGGCAGACAGATTGCTGTGAAGGTGCTTTCTATTGAGAAAGAATCCATGAGAGGAGAAAGGGAGTTCATATCTGAATTAACTTCACTTTCCAACATCAGACATGAAAATCTTGTAGGGCTTAAAGGGTGTTGTGTTGATGGAAGTGAAAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCATACGCTCTTCAGGGTGTGAAGGAAAATAGAACGAAGCTTAGTTGGCAAGCCAGAAAGGACATTTTGATTGGCGTAGCTCGTGGCCTTGCCTATCTTCACGAGGAGCTTCGGCCGCATATAGTTCATAGAGATATAAAAGCCAGCAATATACTCCTGGGCCATGATTTTATGCCTAAAGTTGCGGATTTTGGATTGGCAAGGTTGTTGAGGGATAACCATTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCAGAATATGCTGTGAGTGGGCATTTGACACGAAAATCAGATGTCTACAGCTTCGGAGTGTTGTTGTTGGAGATTGTTAGTGGGAGAGCAACTGTTGATTTTGATTTGGAACATGGTGAACACCACTTGGTTCAGAAGGTATGGGAACATTACAAGGCGAATGAGCTAGTAAAATTGGTAGATCCCGTGCTCGACATGGACTTCCCCAAAGAAGAGATTGTTCGATTTATGAAAATTGGCCTACTCTGTGTGCAAGAAAACACAACGAGACGACCACAAATGTCTCTCGCAGTAAGCATGTTAATGAAGGAGACTGACCTAAAAGATCATCAGATTTCACAACCGGGACATATTATCGACTTCATGGACATTAAAATGGGTAAAGGAAATTCGTCAACAAGCATTTTCTCCAAGGTTTCCTCACCAAGTAGCATGCAAAGTTTCTGA 1107 43.81 MKFRFLLSSCCSARSPTAMENGCHADRQDNEGFRIYSYNELKSATRGFSAANKVGEGGFGSVYKGRLRDGRQIAVKVLSIEKESMRGEREFISELTSLSNIRHENLVGLKGCCVDGSERYLVYDYMENNSLAYALQGVKENRTKLSWQARKDILIGVARGLAYLHEELRPHIVHRDIKASNILLGHDFMPKVADFGLARLLRDNHSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLEHGEHHLVQKVWEHYKANELVKLVDPVLDMDFPKEEIVRFMKIGLLCVQENTTRRPQMSLAVSMLMKETDLKDHQISQPGHIIDFMDIKMGKGNSSTSIFSKVSSPSSMQSF 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11590267 11592838 + MC01g0519 Mch1g0796 675688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0796 368 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524(InterPro)
Mch1g0796 368 Gene3D Transferase(Phosphotransferase) domain 1 126 336 - -
Mch1g0796 368 SMART serkin_6 48 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0796 368 Pfam Protein tyrosine and serine/threonine kinase 51 318 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0796 368 Gene3D Phosphorylase Kinase; domain 1 13 125 - -
Mch1g0796 368 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 361 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Mch1g0796 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0796 368 FunFam Putative LRR receptor-like serine/threonine-protein kinase 126 333 - -
Mch1g0796 368 CDD STKc_IRAK 54 323 - -
Mch1g0796 368 FunFam Serine/threonine-protein kinase receptor 19 125 - -
Mch1g0796 368 SUPERFAMILY Protein kinase-like (PK-like) 32 331 IPR011009 -
Mch1g0796 368 ProSiteProfiles Protein kinase domain profile. 48 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0796 Mch-Chr1:11590267 Mch3g1143 Mch-Chr3:14723519 3.77E-110 dispersed
Mch1g0796 Mch-Chr1:11590267 Mch10g0989 Mch-Chr10:7067822 6.59E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77112 PF00069 Pkinase 2.20E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0796 - - - 0.0