Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0798 ATGTCTAAGGATGTTGAAGCCGGAGCCGGAGGGTTTGCCGCCGGTGACTACCTGGACCAGCCGCCGGCTCCATTGTTCGACGCCGGGGAGCTTGGCCGGTGGTCGTTTTACAGGGCCGTTATCGCTGAGTTCGTTGCCACGCTCTTGTTTTTGTACGTCGGAGTGCTCACTGTGATTGGCGATAAGACTCAGGCTTCCGCCGCCGCGTGCGGCGGCTTTGGAGTTTTGGGTATCGCTTGGGCTTTCGGCGGCACCATCTTCGTTCTCGTTTACTGTACCGCCGGCATTTCTGGAGGACATATTAACCCAGCAGTCACATTTGGGCTTTTCTTGGGGCGGAAGGTGTCGCTGGTGAGAGCCGTACTGTACATAGCGGCTCAGTGTTTGGGAGCCATATGTGGGTGTGGGCTCGTTAAGTCACTAAAAAAGCCCAACTTCAATTCCTTCGACGGCGGAGCCACCGAGCTCGCCCAAGGCTACGGCGCCGGCGCCGGCCTCGCCGCCGAGATCACCGGAACCTTCGTTCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCACGTTCCTGTTCTGGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTCGTGAACCTGGCCACGATTCCGGTCACCGGCGCCGGTATCAACCCGGCTCGGAGCTTCGGCTCTGCTGTGATGTTCAACAGAGACAAAGCTTGGGATGATCACTGGATATTCTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTCTCAGAGGAGGAGCTGTTAAAAGCTTGAGATCCTTCAGGAGTTCCTACGCAAATTGA 849 56.54 MSKDVEAGAGGFAAGDYLDQPPAPLFDAGELGRWSFYRAVIAEFVATLLFLYVGVLTVIGDKTQASAAACGGFGVLGIAWAFGGTIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRAVLYIAAQCLGAICGCGLVKSLKKPNFNSFDGGATELAQGYGAGAGLAAEITGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNRDKAWDDHWIFWVGPFIGAAMAAIYHEFVLRGGAVKSLRSFRSSYAN 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11604393 11606257 - MC01g_new0278 Mch1g0798 675690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0798 282 NCBIfam MIP family channel protein 42 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0798 282 FunFam Probable aquaporin PIP1-2 23 280 - -
Mch1g0798 282 SUPERFAMILY Aquaporin-like 33 266 IPR023271 -
Mch1g0798 282 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Mch1g0798 282 Gene3D Glycerol uptake facilitator protein. 23 282 IPR023271 -
Mch1g0798 282 CDD MIP 38 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0798 282 Pfam Major intrinsic protein 31 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0798 282 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 278 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Mch1g0798 282 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0798 282 PRINTS Major intrinsic protein family signature 204 226 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0798 282 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0798 282 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0798 282 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0798 282 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0798 Mch-Chr1:11604393 Mch1g0801 Mch-Chr1:11624180 2.68E-155 dispersed
Mch1g0798 Mch-Chr1:11604393 Mch1g0800 Mch-Chr1:11615301 1.79E-150 proximal
Mch1g0798 Mch-Chr1:11604393 Mch2g0984 Mch-Chr2:6647741 4.97E-131 wgd
Mch1g0798 Mch-Chr1:11604393 Mch2g0356 Mch-Chr2:2667614 7.69E-148 wgd
Mch1g0798 Mch-Chr1:11604393 Mch4g2057 Mch-Chr4:22803334 3.45E-144 wgd
Mch1g0798 Mch-Chr1:11604393 Mch5g1752 Mch-Chr5:18123479 7.70E-137 wgd
Mch1g0798 Mch-Chr1:11604393 Mch9g1784 Mch-Chr9:19720111 4.83E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0798 K09872 - csv:101215842 470.314