Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0800 ATGGCCAAGGACTCTGAAGCCGGAGGGTTCGCCGCCAAGGACTACCATGACCCACCGCCGGCGCCGTTGATCGACGCCCAGGAGTTCACTCAGTGGTCATTTTACAGAGCCATCATTGCCGAGTTCATCGCCACGCTTCTCTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGTCATCAGTCCGACACCAAAAACGGCGGCGAAATCTGCGGCGGCGTCGGCATTCTCGGCGTCGCCTGGGCCTTTGGCGGCATGATCTTCGTTCTCGTCTACTGCACCGCTGGAATTTCCGGAGGGCATATTAATCCGGCGGTGACATTTGGGTTGCTCTTGGCTCGGAAGGTTTCGTTGGTGAGGGCCATTCTGTACATGGTGGCTCAGAGTTTGGGTGCGATTTGTGGGTGTGCGTTGGTTAAATCTTTTCAGAAGGGTCTCTACCATCGCTACAACGGTGGAGCCAATCAGCTCGCCGACGGCTACAGCACCGGCACCGGCTTGGCCGCGGAGATCATCGGAACTTTCGTTCTTGTGTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGTGCCAGAGATTCTCACGTTCCTGTTCTAGCACCGCTGCCAATTGGGTTCGCCGTCTTCATGGTCCACCTTGCCACCATTCCGATCACCGGCACGGGAATCAACCCCGCTCGGAGCTTCGGAGCTGCAGTGATCATCAACAAAAGCAAGCCCTGGGATGACCAGTGGATTTTCTGGGTTGGACCCTTCATCGGAGCTGCAATTGCTGCGTTTTATCACCAGTTCATTTTGAGAGCAGGAGCAGTTAAAGCTCTGGGATCGTTCAGGAGTTCCCACAGTGTCTGA 855 55.09 MAKDSEAGGFAAKDYHDPPPAPLIDAQEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSHQSDTKNGGEICGGVGILGVAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAILYMVAQSLGAICGCALVKSFQKGLYHRYNGGANQLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIINKSKPWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSSHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11615301 11616480 - MC01g_new0279 Mch1g0800 675692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0800 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0800 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Mch1g0800 284 NCBIfam MIP family channel protein 40 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0800 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0800 284 SUPERFAMILY Aquaporin-like 27 268 IPR023271 -
Mch1g0800 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Mch1g0800 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Mch1g0800 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0800 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0800 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0800 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0800 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0800 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0800 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0569 Mch-Chr1:9907377 Mch1g0800 Mch-Chr1:11615301 7.40E-14 dispersed
Mch1g0800 Mch-Chr1:11615301 Mch9g1784 Mch-Chr9:19720111 1.03E-169 dispersed
Mch1g0798 Mch-Chr1:11604393 Mch1g0800 Mch-Chr1:11615301 1.79E-150 proximal
Mch1g0800 Mch-Chr1:11615301 Mch1g0801 Mch-Chr1:11624180 1.44E-178 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0800 K09872 - csv:101214884 520.005