Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0801 ATGCCGAAGGATATCGAAGCAGGAGGGCGAGGTGGGTTCGGCGCCAAAGATTACGAAGACCCACCGCCGGCCCCATTGATCGACGGCCACGAGTTCGCTAAATGGTCGTTTTACAGAGCCATTATTGCAGAGTTTGTAGCCACGCTTCTGTTTCTGTATGTTACTGTTTTGACTGTGATTGGGTATAAGATTCAGAGCGATGTCAATAATGGAGGGGAGATTTGCGGCGGCGTCGGCATTCTGGGCATCGCTTGGGCCTTCGGCGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGAATTTCTGGAGGGCATATTAACCCCGCGGTGACTTTTGGGCTGTTTCTTGCTCGAAAGGTGTCTCTGGTGAGAGCCGTTTTATATATGGCGGCGCAATGTTTGGGCGCAATTTGTGGGTGTGCGTTGGTGAAGTCATTCCAAAAGGCTCACTACATTGAGTACGGCGGTGGAGCCAATCAGCTCGCCGTTGGGTACAGCACCGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCTGCCACCGATCCCAAGAGGAACGCCAGAGATTCTCACGTTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTCATGGTTCATCTGGCCACCATTCCGATCACCGGAACCGGCATCAATCCCGCTCGGAGCTTGGGGGCTGCTGTGATCTTTAACAAAGACAAGATATGGGATGACCAGTGGATCTTCTGGGTTGGCCCCTTCATTGGAGCTGCCATTGCTGCAATTTATCACCAAATTATATTGAGGGCAGGCGCTGTTAAGGCTCTTGGATCGTTCAGAAGTTCCACCGCCGTGTAA 864 52.55 MPKDIEAGGRGGFGAKDYEDPPPAPLIDGHEFAKWSFYRAIIAEFVATLLFLYVTVLTVIGYKIQSDVNNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQCLGAICGCALVKSFQKAHYIEYGGGANQLAVGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNKDKIWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRSSTAV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11624180 11630207 + MC01g0522 Mch1g0801 675693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0801 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Mch1g0801 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Mch1g0801 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Mch1g0801 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Mch1g0801 287 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0801 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0801 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0801 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0801 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0801 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0801 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0801 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0801 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Mch1g0801 287 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0798 Mch-Chr1:11604393 Mch1g0801 Mch-Chr1:11624180 2.68E-155 dispersed
Mch1g0801 Mch-Chr1:11624180 Mch2g0356 Mch-Chr2:2667614 3.72E-168 dispersed
Mch1g0800 Mch-Chr1:11615301 Mch1g0801 Mch-Chr1:11624180 1.44E-178 tandem
Mch1g0801 Mch-Chr1:11624180 Mch1g0802 Mch-Chr1:11632059 1.53E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0801 K09872 - csv:101216085 514.227