Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0802 ATGTCCAACAATGTTGGCGCCAAGGACTACCACGACCCGCCTGCAGTCCCCTTGATCGACGCCAAGGAGTTCAGCCAGTGGTCATTTTACAGGGCCATCATCGCCGAGTTCGTCGCCACGCTTTTGTTCTTGTACATCATTGTTCTCACTGTCACTGGCCACGCCAGCCGGACCGACCCGGCCAATGGCGGACAGCCGTGCGCCGGCGTCGGCATTTTGGGCATTTCCTGGGCAGTTGGCGGCATGATCTTCGTCCTCGTTTACTGTACCGCTGGTATTTCTGGAGGGCACATTAATCCGGCGGTGACGTTCGGGCTGTTTCTGGCTCGAAAGATCTCTCTGGCGAGAGCTGTGTTGTACATGGGGGTACAATGTTTGGGGGCCATTTGGGGGTGTGCGTTGGCGAAATCATTTCAGAAGGCTTATTACGATCGCTACGGCGGCGGAACCAACGTTCTCGCCGATGGATACAGCGCCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTTGTTCTGGTTTACACTGTCTTCTCTGCCACCGATCCCAAGAGGAACGCTAGAGATTCTCACGTTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATAAACCCAGCTCGAAGCTTAGGAGCTGCTGTGATCTTTAACAAAGCCAAGGCCTGGAATGATCATTGGATCTTCTGGGTTGGCCCCTTCGTCGGTGCTACCATTGCTGCAATTTATCACCAAATCATAATGAGGGCAGGTGCAGTTAAAGCTCTGGCATCGTTCAGAAGTTCCTCCGCCGTATAA 840 54.4 MSNNVGAKDYHDPPAVPLIDAKEFSQWSFYRAIIAEFVATLLFLYIIVLTVTGHASRTDPANGGQPCAGVGILGISWAVGGMIFVLVYCTAGISGGHINPAVTFGLFLARKISLARAVLYMGVQCLGAIWGCALAKSFQKAYYDRYGGGTNVLADGYSAGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNKAKAWNDHWIFWVGPFVGATIAAIYHQIIMRAGAVKALASFRSSSAV 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11632059 11633150 + MC01g_new0280 Mch1g0802 675694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0802 279 Gene3D Glycerol uptake facilitator protein. 16 279 IPR023271 -
Mch1g0802 279 Pfam Major intrinsic protein 23 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0802 279 SUPERFAMILY Aquaporin-like 23 263 IPR023271 -
Mch1g0802 279 FunFam Probable aquaporin PIP1-2 16 277 - -
Mch1g0802 279 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0802 279 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0802 279 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0802 279 PRINTS Major intrinsic protein family signature 31 50 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0802 279 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0802 279 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0802 279 NCBIfam MIP family channel protein 35 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0802 279 CDD MIP 31 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0802 279 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Mch1g0802 279 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 275 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0802 Mch-Chr1:11632059 Mch9g1784 Mch-Chr9:19720111 9.03E-158 dispersed
Mch1g0801 Mch-Chr1:11624180 Mch1g0802 Mch-Chr1:11632059 1.53E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0802 K09872 - csv:101215366 468.388