Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g0802 | ATGTCCAACAATGTTGGCGCCAAGGACTACCACGACCCGCCTGCAGTCCCCTTGATCGACGCCAAGGAGTTCAGCCAGTGGTCATTTTACAGGGCCATCATCGCCGAGTTCGTCGCCACGCTTTTGTTCTTGTACATCATTGTTCTCACTGTCACTGGCCACGCCAGCCGGACCGACCCGGCCAATGGCGGACAGCCGTGCGCCGGCGTCGGCATTTTGGGCATTTCCTGGGCAGTTGGCGGCATGATCTTCGTCCTCGTTTACTGTACCGCTGGTATTTCTGGAGGGCACATTAATCCGGCGGTGACGTTCGGGCTGTTTCTGGCTCGAAAGATCTCTCTGGCGAGAGCTGTGTTGTACATGGGGGTACAATGTTTGGGGGCCATTTGGGGGTGTGCGTTGGCGAAATCATTTCAGAAGGCTTATTACGATCGCTACGGCGGCGGAACCAACGTTCTCGCCGATGGATACAGCGCCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTTGTTCTGGTTTACACTGTCTTCTCTGCCACCGATCCCAAGAGGAACGCTAGAGATTCTCACGTTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATAAACCCAGCTCGAAGCTTAGGAGCTGCTGTGATCTTTAACAAAGCCAAGGCCTGGAATGATCATTGGATCTTCTGGGTTGGCCCCTTCGTCGGTGCTACCATTGCTGCAATTTATCACCAAATCATAATGAGGGCAGGTGCAGTTAAAGCTCTGGCATCGTTCAGAAGTTCCTCCGCCGTATAA | 840 | 54.4 | MSNNVGAKDYHDPPAVPLIDAKEFSQWSFYRAIIAEFVATLLFLYIIVLTVTGHASRTDPANGGQPCAGVGILGISWAVGGMIFVLVYCTAGISGGHINPAVTFGLFLARKISLARAVLYMGVQCLGAIWGCALAKSFQKAYYDRYGGGTNVLADGYSAGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNKAKAWNDHWIFWVGPFVGATIAAIYHQIIMRAGAVKALASFRSSSAV | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11632059 | 11633150 | + | MC01g_new0280 | Mch1g0802 | 675694 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g0802 | 279 | Gene3D | Glycerol uptake facilitator protein. | 16 | 279 | IPR023271 | - | |
Mch1g0802 | 279 | Pfam | Major intrinsic protein | 23 | 258 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch1g0802 | 279 | SUPERFAMILY | Aquaporin-like | 23 | 263 | IPR023271 | - | |
Mch1g0802 | 279 | FunFam | Probable aquaporin PIP1-2 | 16 | 277 | - | - | |
Mch1g0802 | 279 | PRINTS | Major intrinsic protein family signature | 116 | 135 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch1g0802 | 279 | PRINTS | Major intrinsic protein family signature | 201 | 223 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch1g0802 | 279 | PRINTS | Major intrinsic protein family signature | 241 | 261 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch1g0802 | 279 | PRINTS | Major intrinsic protein family signature | 31 | 50 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch1g0802 | 279 | PRINTS | Major intrinsic protein family signature | 165 | 183 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch1g0802 | 279 | PRINTS | Major intrinsic protein family signature | 79 | 103 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch1g0802 | 279 | NCBIfam | MIP family channel protein | 35 | 257 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch1g0802 | 279 | CDD | MIP | 31 | 261 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch1g0802 | 279 | ProSitePatterns | MIP family signature. | 97 | 105 | IPR022357 | - | |
Mch1g0802 | 279 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 7 | 275 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g0802 | Mch-Chr1:11632059 | Mch9g1784 | Mch-Chr9:19720111 | 9.03E-158 | dispersed | |
Mch1g0801 | Mch-Chr1:11624180 | Mch1g0802 | Mch-Chr1:11632059 | 1.53E-165 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch1g0802 | K09872 | - | csv:101215366 | 468.388 |