Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0809 ATGATTACGTTTATGGATTCGAAAGAGAAAGTGAAGGAGATGGAGAAATGCTTAGATCCTCAGCTATGGCATGCCTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAAGGTTTTCTATTTCCCTCAAGGCCACGCCGAGCATGCTTGCGCGCCAGTTGATTTCAGGAACTGTCCTAAAGTTCCTCCATACACCCTTTGCAGAGTTTCTGCCATCAAGTTCCTTGCCGATCCCGACACTGATGAGGTCTTTGCGAAAGTTCGGTTGACCCCCGTTAATGGGAGCGAGCTCGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGTCTGAACAAGATAAGCCAACTTCATTTGCCAAGACATTGACTCAGTCTGATGCAAACAATGGTGGGGGTTTCTCTGTTCCGAGGTATTGTGCAGAAACAATCTTCCCTCGGTTGGACTACTCGGCTGATCCACCGGTTCAGACGATCCTTGCTAAGGATGTTCATGGTGAGACATGGAAATTTAGGCACATTTACAGGGGGACGCCTCGGCGTCATCTTTTGACCACTGGGTGGAGTACTTTTGTTAACCATAAGAAGCTTGTTGCGGGTGATTCCATTGTTTTCTTGAGGGCGGAGAATGGAGATCTCTGCGTCGGGATTAGACGAGCGAAGAGGGGGATTGGAGATGGATTGGAGACGTCGTGTGGATGGAATCCTGCAGGTGGGAACTGCACTGTTCCCTGCGGAGCATTCTCGGCGTTTTTGAGGGAAGATGAAAATAGACTGACGAGGTCTGCTAATGGCTTGAATGGAAATGGAAGCCTAATGGGGAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCGAATGGGCAGACATTTGAAATAGTGTACTACCCGAGAGCTAGTACTCCTGAGTTCTGTGTTAAGGCAGCACTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCCGGCATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGGATAAGCTGGTTCATGGGTACCATTAACTCGGTTCAGGTTGCCGACCCAGTGCGCTGGTCTGAGTCACCATGGAGGCTTCTACAGGTTACTTGGGATGAACCGGATTTACTTCAGAATGTGAAACGTGTAAGCCCATGGTTGGTCGAATTGGTGTCGAACATGTCTCCTATTCACCTCGCCCCCTTCTCACCTCCGAGGAAGAAGTTTAGATATCCACAACACCCTGATTTCCCCCTCGATAACCAGCCTTCTATGCCGTCGTTCTCTAGTTATCTCCATGGGCCCGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTCCATCTCAGTAAACTGCAGTCAGGTCTATTTCCGGTTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAGCCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTACTCAAGCGTCAAAGAAATTTGATGGCATAAAGACTCCCCAGCTAATCCTTTTTGGCCGACCGATTCTTACGGAGTTGCAGATGTCTCAGAGCTGCTCTGGTGATACCGTTTCTCCAGTTGGTACTGGAAATAGTTCATCAGATGGAAATGGAGATAAAATGGCGAATTTCTCCGATGGTTCTGGATCTGCTCTGCATCAACAAGGTGTTGCAGAACGCTCCTCTTGCGAAAACTTCCAATGGTACAAGGACAATCGCCAAGAAGTTGAGCCTAACTTGGATACTGGTCACTGTAAAGTGTTTATGGAATCAGAAGACGTAGGTCGCACTCTTGATCTTTCTTCTCTTGGATCGTACGAAGAATTGTACAGAAAACTCGGAAACATGTTCGGTATAGATAATTCAGAGACGTTAAACCACATCTTGTACCGTGATGTTTCCGGTGCTGTCAAGCATGTTGGTGACGAACAATTCAGCGAGTTCATCAAGACAGCAAGGAGATTGACGATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 2100 47.86 MITFMDSKEKVKEMEKCLDPQLWHACAGGMVQMPPVNAKVFYFPQGHAEHACAPVDFRNCPKVPPYTLCRVSAIKFLADPDTDEVFAKVRLTPVNGSELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGLETSCGWNPAGGNCTVPCGAFSAFLREDENRLTRSANGLNGNGSLMGKGKVKPESVIEAATLAANGQTFEIVYYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVADPVRWSESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKFRYPQHPDFPLDNQPSMPSFSSYLHGPGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFPVGYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTTQASKKFDGIKTPQLILFGRPILTELQMSQSCSGDTVSPVGTGNSSSDGNGDKMANFSDGSGSALHQQGVAERSSCENFQWYKDNRQEVEPNLDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHILYRDVSGAVKHVGDEQFSEFIKTARRLTILTDSGSNNVGA 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11657507 11661499 - MC01g0526 Mch1g0809 675701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0809 699 ProSiteProfiles PB1 domain profile. 613 693 IPR053793 -
Mch1g0809 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 695 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch1g0809 699 Gene3D - 611 697 - -
Mch1g0809 699 FunFam Auxin response factor 118 222 - -
Mch1g0809 699 SUPERFAMILY DNA-binding pseudobarrel domain 114 223 IPR015300 -
Mch1g0809 699 Gene3D - 324 398 - -
Mch1g0809 699 Gene3D - 118 222 IPR015300 -
Mch1g0809 699 CDD B3_DNA 119 220 IPR003340 GO:0003677(InterPro)
Mch1g0809 699 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Mch1g0809 699 MobiDBLite consensus disorder prediction 551 586 - -
Mch1g0809 699 Pfam Auxin response factor 287 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch1g0809 699 FunFam Auxin response factor 325 398 - -
Mch1g0809 699 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Mch1g0809 699 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0809 Mch-Chr1:11657507 Mch8g3259 Mch-Chr8:34534366 1.77E-79 dispersed
Mch8g0190 Mch-Chr8:1253533 Mch1g0809 Mch-Chr1:11657507 8.80E-114 transposed
Mch1g0809 Mch-Chr1:11657507 Mch2g0348 Mch-Chr2:2596558 8.05e-313 wgd
Mch1g0809 Mch-Chr1:11657507 Mch4g2052 Mch-Chr4:22773171 7.49E-277 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42693 PF02362 B3 1.50E-21 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0809 K14486 - csv:101217039 1339.32