Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0814 TGGAACAGGGTGCTGCTACTGGCTTGTTTGGTGTCCGTCTTTGTGGACCCTTTGTTCTTGTTCGTGGCTGCAGTGAGGGCGGAGGAGGCATGTGTTGAAAGGCGCGATCGAGGGCTCGAGGTGGCGCTCTCGCTACTCCGATCCATGGCCGATGCCTTCTACATAATGCACATTCTGATCAGGTTTAGGTTCAGGTTTACCACGCCTTATCTTCTTCTTCACTTCTGCCTCGACTTTCTAGCTGCATTGCCTCTTCCACAGGCATTCATCTGGGTTGCAATCCCAAACATAATTAGTGGTTCAAACATGAGCCCATGGATTCACGTTGCTGGGTTCTCCATGTTGTTCCAATACCTGTTGAGGCTGTATCTAATCTTCCCTCTCTCAGACCAAATCGTGAAGGCCACTGGAGTTCTCATGAAGACAGCATGGGCTGGAGCTGCCTACAACCTTATGCTCTTTATGCTAGCAAGCCACGTTTTGGGGTCGTGTTGGTACCTGCTATCCATAGGACGACAAGTAGAATGCTGGAAAAAAGTTTGCAATTTGGGGCATTGGGATTATTACTACTACTGCCAATATGAGTTTTTTGACTGTGGGACTGTGGGAAACCCAACCAGAGCTGCTTGGTTCCAAGTGACTAATATCTCTAATCTGTGCCATCCCACAGCCACTGCCTCCTTCCATTTTGGCATCTTTTCTGATTCTTTCTCCTTTCACTCTTCTTCTTCCACCTTCTTCAATAGGTACTTCTATTGTTTTTGGTGGGGCTTGAGGAATTTAAGCTCTTTGGGGCAAAACTTACTAACAAGTGACAACGTGGGAGAAATAAATTTCGCGATTGTGATAGCAATTGTGGGGTTGGTGCTATTCGCACTTCTTATTGGAAACATGCAAACTTATCTTGAATCCACAACCTTAAGGGTAGAACAATGGAGGGTGAGGAGGCAAGACACAGAGCAGTGGATGCGCCACAGGCAGCTGCCCTATGAACTGAAGCAAAGTGTCAGAAAATACGAGCAATTCCGATGGATCGCAACTCGCGGCGTCGACGAAGAACACATTCTCAAAGCCCTTCCCATGGACCTCCGCCGTGACATCAAGCGCCATCTCTGCCTTGATCTGGTTCGACAGGTGCCGCTTTTTGATGAAATGGAGGAGACAATGTTGGATGCGATATGCGAAAGATTGAGACCCCGTTTGTGGACGTCGAGCACCGGTCTGGTCCGGGAGGGTGACCCGGTGAACGAGATGGTTTTCGTAATCCGGGGCCATTTGGACTCGCACACGACGAACGGCGGCCGGACCGGGTTCTTCAACTCGAGCCGGCTCGGGCCGAGCGAGTTCTGCGGGGAGGAGCTGCTGCCGTGGGCGCTGGACCCGCGGCCGGGCGCCGTGCTGCCGTCGTCCACGCGCACCGTTAAGGCGATCACCGAAGTGGAGGGGTTCGCGCTCGTGGCGGAGGATCTGAAGTTCGTGGCGGCGCAGTTTCGGCGGCTGCGGAGCAAGCAGGTGCGGTGCACGTTCCGGTTCCACTCGCACCAGTGGCGCACGTGGGCCGCATGCTTCATACAGGCCGCCTGGTTCAGCTATAAGCGCCGGAGGGAAGCGTCTGATCAGGCCGCCGGTGCCGGTGCGACGTCGTTTGTGGAGTATACTGTGAGATGCAAGAGGGTTGTCGCTGGCGGCGGTGCCGGGACTAGCCGTTGCGACGGTCATGGCTCGTTGATGAAACCCATTGAACCCGAGTTCTCTGTCGAAGAGAGATGA 1770 53.45 WNRVLLLACLVSVFVDPLFLFVAAVRAEEACVERRDRGLEVALSLLRSMADAFYIMHILIRFRFRFTTPYLLLHFCLDFLAALPLPQAFIWVAIPNIISGSNMSPWIHVAGFSMLFQYLLRLYLIFPLSDQIVKATGVLMKTAWAGAAYNLMLFMLASHVLGSCWYLLSIGRQVECWKKVCNLGHWDYYYYCQYEFFDCGTVGNPTRAAWFQVTNISNLCHPTATASFHFGIFSDSFSFHSSSSTFFNRYFYCFWWGLRNLSSLGQNLLTSDNVGEINFAIVIAIVGLVLFALLIGNMQTYLESTTLRVEQWRVRRQDTEQWMRHRQLPYELKQSVRKYEQFRWIATRGVDEEHILKALPMDLRRDIKRHLCLDLVRQVPLFDEMEETMLDAICERLRPRLWTSSTGLVREGDPVNEMVFVIRGHLDSHTTNGGRTGFFNSSRLGPSEFCGEELLPWALDPRPGAVLPSSTRTVKAITEVEGFALVAEDLKFVAAQFRRLRSKQVRCTFRFHSHQWRTWAACFIQAAWFSYKRRREASDQAAGAGATSFVEYTVRCKRVVAGGGAGTSRCDGHGSLMKPIEPEFSVEER 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11695435 11699622 - MC01g0529 Mch1g0814 675706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0814 589 FunFam Cyclic nucleotide-gated ion channel 1 379 497 - -
Mch1g0814 589 FunFam Cyclic nucleotide-gated ion channel 1 308 372 - -
Mch1g0814 589 Pfam Ion transport protein 5 306 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0814 589 SUPERFAMILY cAMP-binding domain-like 311 500 IPR018490 -
Mch1g0814 589 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 539 - -
Mch1g0814 589 SUPERFAMILY Voltage-gated potassium channels 1 303 - -
Mch1g0814 589 Gene3D Helix hairpin bin 308 372 - -
Mch1g0814 589 Gene3D Jelly Rolls 379 499 IPR014710 -
Mch1g0814 589 ProSiteProfiles cAMP/cGMP binding motif profile. 381 466 IPR000595 -
Mch1g0814 589 CDD CAP_ED 381 501 IPR000595 -
Mch1g0814 589 Gene3D - 9 304 - -
Mch1g0814 589 SMART cnmp_10 381 512 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0814 Mch-Chr1:11695435 Mch6g0569 Mch-Chr6:3847913 2.02E-200 dispersed
Mch1g0814 Mch-Chr1:11695435 Mch2g0345 Mch-Chr2:2559871 1.83E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0814 K05391 - csv:101221856 779.245