Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0817 ATGGCTGAGCAAAACGGGTTTTGCGTCGTGGGCCGGAGCGACCCGCTAAACTGGGTCGGAGCCGCGGAGTCGCTGAAGGGAAGTCATTTGGATGAGGTGAAGAGGATGGTGGAGGAGTACCGGCGTCCGGTCGTGAAGCTCGGAGGCGAGACGCTCACCATTTCTCAAGTTGCTGCCATCGCGGCCCGAGACTCGGAGGTCACGGTGGAGCTGTCCGAGTCGGCTAGAGCCGGTGTCAAAGCCAGTAGTGATTGGGTGATGGAGAGTATGAACAAAGGAACAGATAGCTATGGTGTTACCACCGGTTTTGGTGCTACTTCGCACCGACGAACCAAACAAGGTGGTGCCCTTCAGAAGGAACTCATACGATTTTTGAATGCAGGGATATTTGGAAATGGCACCGAGTCAAGTCACACTTTGCCTCACACAGCAACAAGAGCAGCTATGTTGGTTAGAATCAATACTCTCCTTCAAGGCTACTCAGGGATTAGGTTTGAAATTTTAGAAGCCATAACCAAACTTCTCAACCACAATATTACTCCATGTTTGCCTCTCCGTGGAACAATTACGGCTTCGGGAGATCTCGTTCCTCTTTCTTACATTGCTGGATTACTCACGGGTAGACCAAATTCCAAAGCTGTCGGACCAAGTGGAGAAAGTCTTGATGCGAATGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTCGAGTTGCAGCCTAAAGAAGGGTTGGCTCTTGTAAACGGGACTGCTGTTGGTTCTGGGTTAGCTTCTACTGTTCTTTTTGAAGCAAATATTTTGGCTGTTTTATCTGAGATTTTATCTGCTATTTTTGCTGAAGTTATGCAAGGTAAGCCTGAATTTACTGATCATTTGACCCATAAGTTAAAGCATCATCCTGGTCAAATTGAGGCGGCGGCAATCATGGAACATATTTTGGATGGAAGCTCTTACATGAAAACTGCTAAGAAGCTGCATGAAATTGATCCACTCCAAAAGCCAAAACAAGATCGTTATGCTCTTAGAACTTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCCATTGAGCGAGAGATTAATTCAGTCAACGATAACCCTTTGATTGATGTTTCAAGGAATAAGGCTTTACATGGAGGTAACTTTCAAGGAACTCCAATTGGAGTCTCTATGGACAACACTCGTTTGGCCATAGCTTCGATTGGAAAGCTCATTTTCGCTCAATTTTCAGAGTTGGTCAATGACTTTTACAACAATGGTTTGCCCTCAAATCTCTCTGCAAGTAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCGGAAATTGCCATGGCTTCTTATTGCTCCGAGCTTCAATATTTGGCGAACCCAGTTACTACTCATGTCCAAAGTGCAGAACAACATAATCAAGATGTCAACTCTCTTGGTTTAATATCGTCAAGGAAAACAGCTGAGGCAATTGATATTTTGAAGCTCATGTCTTCCACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAACACACAGTAAAAAACACAGTAAGTCAAGTGGCCAAGAAAGTCCTCACCACAGGTGCCAATGGAGCGCTTCACCCATCAAGATTTTGTGAGAAAGATTTACTCAAAGTTGTTGACAAAGAATATACCTTTGCTTACATTGATGACCCATGCAGTGTCACTTATCCACTAATGCAAAAGTTAAGACAAGTTTTGGTTGAGCATGCACTTTCAAACGGAGAAGATGAGAAGAAGCCAAACAACTCAATCTTTCAAAAGATTGGAGTTTTTGAGGAGGCATTGAAAACTATTTTGCCTAAGGAAGTAGAAAATGCAAGGGTAGCTTATGAAAATGGAAAATCTACCGTTCAAAACCAGATTAAAGAATGCAGATCATATCCATTATATAAGTTTGTGAGATCAGAATTAGGAACTGGGTTGCTTACCGGAGAGAAGGTAATATCTCCTGGAGAAGTATGTGAGAAAGTGTTCACAGCTTTATGTCAAGGAAAGATGATTGATCCAATTTTAGAATGTTTAAAGGAGTGGAACGGTGCTCCGATCCCTATTTGCTGA 2118 43.06 MAEQNGFCVVGRSDPLNWVGAAESLKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIAARDSEVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGESLDANEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASTVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDKEYTFAYIDDPCSVTYPLMQKLRQVLVEHALSNGEDEKKPNNSIFQKIGVFEEALKTILPKEVENARVAYENGKSTVQNQIKECRSYPLYKFVRSELGTGLLTGEKVISPGEVCEKVFTALCQGKMIDPILECLKEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11724681 11728505 + MC01g_new0286 Mch1g0817 675709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0817 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841(InterPro)
Mch1g0817 705 NCBIfam phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Mch1g0817 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824(InterPro)
Mch1g0817 705 CDD PAL-HAL 50 515 IPR001106 -
Mch1g0817 705 Gene3D - 6 251 IPR024083 -
Mch1g0817 705 FunFam Phenylalanine ammonia-lyase 518 639 - -
Mch1g0817 705 Pfam Aromatic amino acid lyase 52 530 IPR001106 -
Mch1g0817 705 PANTHER HISTIDINE AMMONIA-LYASE 12 705 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Mch1g0817 705 FunFam Phenylalanine ammonia-lyase 252 561 - -
Mch1g0817 705 Gene3D - 518 639 IPR023144 -
Mch1g0817 705 FunFam Phenylalanine ammonia-lyase 6 251 - -
Mch1g0817 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0817 Mch-Chr1:11724681 Mch1g0819 Mch-Chr1:11734712 0 dispersed
Mch1g0817 Mch-Chr1:11724681 Mch1g0818 Mch-Chr1:11730565 0 tandem
Mch5g1064 Mch-Chr5:8651912 Mch1g0817 Mch-Chr1:11724681 6.86E-63 transposed
Mch5g1065 Mch-Chr5:8653830 Mch1g0817 Mch-Chr1:11724681 3.15E-44 transposed
Mch6g0950 Mch-Chr6:6730339 Mch1g0817 Mch-Chr1:11724681 1.85E-292 transposed
Mch1g0817 Mch-Chr1:11724681 Mch2g0341 Mch-Chr2:2518239 2.16E-233 wgd
Mch1g0817 Mch-Chr1:11724681 Mch4g2047 Mch-Chr4:22712733 1.37E-50 wgd
Mch1g0817 Mch-Chr1:11724681 Mch9g1792 Mch-Chr9:19796163 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0817 K10775 - csv:101218144 1288.48