Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0818 ATGTCACCCATAGAGGAACATACAAAGAATGCTTTACTTGAGAGCTTCTGCACTAGTACTCATCCTGACCCCCTTAACTGGGGTGTGGCCGCTGAGTCCCTCAAGGGAAGTCATTTCGATGAGGTGAAGCGCATGATGGAGGAGTATCGGATGCCTGTCGTGAAGCTTGGAGGAGAGACTCTCACAATTTCCCAAGTGGCTGCCATTGCTACTCGGGACTCTGATGTCTTGGTGGAGCTGGCTGAGTCTACAAGAGCGGGCGTCAAAGCAAGTAGTGATTGGGTGTTGGAGAGTATAAACAAAGGGATAGATATTTACGGTATCACAACTGGATTTGGTGCCACGTCTCATAGAAGAACCAAACAAGGTGGAGCTCTCCAGAAGGAGTTGATTCGTTTCTTGAATGTTGGGATTCTTGGAAGCGGGGTTGAGTCAAACAACACTTTGCCTCTCTCTGCGACGAGGGCTACTATGTTAGTGAGAATCAACACTCTGCTTCAAGGCTACTCGAGAATTAGATTTGAGATTTTGGAAGCTATTACCAAACTATTGAACCACAACATCACTCCGTGCTTGCCTCTTCGTGGAACACTTACTGCTTCTGGAGATCTGGTTCCTCTTTCTTATATTGCTGGATTACTCACTGGTCGACCAAACTCTAAAGCCGTTGGACCAAATGGAGAAATTCTTGATGCAAAGGATGCTTTCAAACAAGTTGGTATTTCTACTGGCTTTTTTGAGTTCCAGCCCAAGGAGTGTTTTGCTCTTGTCAATAGTACCGCAGTTGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTAGTTGTTTTGTCTGAGATCTTGTCTGCCATTTTTGCTGACGTTATGCAAGGTAAGCCTGAATTTACTGATCATTTGACCCATAAGTTGAAGCACCATCCTGGTCAAATTGAGGCAGCAGCAATTATGGAACATATTTTAGATGGAAGCTCTTACATGAACACAGCTAAGAAACTGCATGAAATTGATCCACTCCAAAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCACCTCAATGGCTTGGTCCATTAATTGAGGTCATTCGATTTTCTACCAAGTCCATCGAGCGAGAGATTAATTCAGTCAATGATAACCCTTTGATTGATGTTTCAAGGAACAAAGCTTTACATGGAGGTAACTTTCAAGGAACTCCAATTGGAGTCTCTATGGACAACACTCGTTTGGCCATAGCTTCGATTGGTAAGCTCATTTTCGCTCAATTTTCAGAGTTGGTCAATGACTTTTACAACAATGGTTTGCCTTCAAATCTCTCTGCGAGTAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCGGAAATTGCCATGGCTTCTTATTGCTCCGAGCTTCAATATTTGGCAAACCCAGTTACTACTCATGTCCAAAGTGCAGAACAACATAATCAAGATGTCAACTCTCTTGGTTTAATATCGTCAAGGAAAACAGCTGAGGCAATTGATATTTTGAAGCTCATGTCTTCTACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAAAACACGGTAAAAAACACAGTAAGTCAAGTGGCCAAGAAAATCCTCGCCTCAAATGCTAATGGAGCGCTTCACTCATCAAAATCTTGTGAGAATTGTGAGAAAGATTTACTCAAAGTTGTTGACAGAGAATATACATTTGCTTACATTGATGATCCATGCAGTGCCACTTATCCGTTAATGCAAAAGTTAAGACAAGCTCTTGTGGAACATGCACTCTCAAATGGAGAAAATGAGAAGAACACAAGTAGTTCAATATTTCAAAAGATTGGAGTTTTCGAGGAGGAATTGAAAACTATTTTGCCTAAGGAAGTAGAAAACACAAGGCTAGCTTATGAAAATGGAAAATCTACGGTTCAAAACCAGATTAAAGAATGCAGATCATATCCATTATACAGGTTTGTAAGATCAGAATTAGGAATTGGGTTGCTTACAGGTGAAAAAGTAATATCTCCCGGAGAAGTATGTGAGAAAGTGTTCACAGCTTTATGCCAAGGAAAGATGATTGAACCAATTTTAGAATGTTTAAAAGAGTGGAATGGTGCTCCGATCCCCATTTGCTGA 2154 41.13 MSPIEEHTKNALLESFCTSTHPDPLNWGVAAESLKGSHFDEVKRMMEEYRMPVVKLGGETLTISQVAAIATRDSDVLVELAESTRAGVKASSDWVLESINKGIDIYGITTGFGATSHRRTKQGGALQKELIRFLNVGILGSGVESNNTLPLSATRATMLVRINTLLQGYSRIRFEILEAITKLLNHNITPCLPLRGTLTASGDLVPLSYIAGLLTGRPNSKAVGPNGEILDAKDAFKQVGISTGFFEFQPKECFALVNSTAVGSGLASIVLFEANILVVLSEILSAIFADVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMNTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKILASNANGALHSSKSCENCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQALVEHALSNGENEKNTSSSIFQKIGVFEEELKTILPKEVENTRLAYENGKSTVQNQIKECRSYPLYRFVRSELGIGLLTGEKVISPGEVCEKVFTALCQGKMIEPILECLKEWNGAPIPIC 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11730565 11733071 + MC01g_new0287 Mch1g0818 675710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0818 717 Gene3D - 15 260 IPR024083 -
Mch1g0818 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841(InterPro)
Mch1g0818 717 PANTHER HISTIDINE AMMONIA-LYASE 19 717 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Mch1g0818 717 Gene3D Fumarase/aspartase (Central domain) 261 712 - -
Mch1g0818 717 SUPERFAMILY L-aspartase-like 23 717 IPR008948 GO:0003824(InterPro)
Mch1g0818 717 NCBIfam phenylalanine ammonia-lyase 23 707 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Mch1g0818 717 FunFam Phenylalanine ammonia-lyase 15 260 - -
Mch1g0818 717 Pfam Aromatic amino acid lyase 61 540 IPR001106 -
Mch1g0818 717 FunFam Phenylalanine ammonia-lyase 261 581 - -
Mch1g0818 717 Gene3D - 527 651 IPR023144 -
Mch1g0818 717 CDD PAL-HAL 59 524 IPR001106 -
Mch1g0818 717 FunFam Phenylalanine ammonia-lyase 527 651 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0818 Mch-Chr1:11730565 Mch1g0820 Mch-Chr1:11739486 0 dispersed
Mch1g0817 Mch-Chr1:11724681 Mch1g0818 Mch-Chr1:11730565 0 tandem
Mch1g0818 Mch-Chr1:11730565 Mch1g0819 Mch-Chr1:11734712 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0818 K10775 - csv:101218144 1247.26