Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0820 ATGGCCGCCCTCCAGAAGATTGATTCGGTTGAGAGCTTGTGCCACAGCCGTAGTGATCCACTCAACTGGGGTTTAGCGGCAGAGTCTCTCAAGGGAAGTCATCTTGATGAGGTGAAGCGTATGGTGGAGGAGTATCGGAGGCCCGTGGTGAAGCTTGGAGGGGAGACGCTCACTATTTCCCAAGTGGCTGCCATTGCTACTCGGGACTCTAATGTCTTAGTGGAGCTGGCCGAGTCCGCGAGAGCGCGGGTCAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAACAAAGGGACGGATAGTTATGGTGTTACTACTGGATTTGGTGCGACATCCCATAGGAGAACTAAACAAGGTGGAGCTCTCCAGAAGGAGCTTATTCGATTCTTGAATGCTGGGATCTTTGGAAGTGGGGCTGAGTCGAGCCATACTTTGCCTCACTCGGCGACGAGGGCGGCAATGTTGGTGAGAATTAATACTCTCCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAGCTTCTCAATAACAATATCACTCCATGCTTGCCACTTCGAGGAACGATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATCGCAGGATTGCTCACTGGCCGACCAAACTCCAAAGCAATTGGACCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCAAACAAGCTGGTATTCCTACTAGCTTCTTTGAATTGCAACCTAAGGAAGGTCTCGCTCTTGTCAATGGTACTGCGGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTAGCTGTTTTGTCAGAAATTTTGTCTGCCATTTTTGCTGAGGTTATGCAAGGTAAGCCTGAATTTACTGATCACTTGACCCATAAGTTGAAGCACCATCCTGGACAAATTGAGGCTGCTGCAATTATGGAACACATTTTAGATGGAAGCTCTTACATGAAAGCTGCCAAGAAATTGCATGAAATTGATCCTCTCCAGAAGCCAAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTTATTCGGTTCTCAACGAAGTCTATTGAGCGAGAGATTAATTCGGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGAAACTTCCAAGGAACTCCAATTGGAGTTTCCATGGATAATACTCGTTTGGCTATCGCTTCAATTGGAAAGCTTATATTTGCTCAATTTTCAGAACTTGTCAACGATTTCTACAACAATGGCTTACCTTCAAATCTCTCGGCAAGTAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAAATCGCCATGGCTTCTTATTGCTCTGAGCTTCAATATCTTGCAAACCCAGTAACTAGTCATGTCCAAAGTGCTGAACAACATAATCAAGATGTCAACTCTCTTGGTTTAATCTCATCGAGGAAAACAGCTGAGGCGATTGACATTTTGAAGCTCATGTCTTCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACTTGGAAGAGAACTTGAAGAACACAGTAAAAAATACAGTGAGCCAAGTGGCAAAAAAGATCCTCACCACGACCTCTAATGGTGCACTCCATCCTTCAAGATTTTGCGAGAAAGATTTACTTAAAGTAGTTGACAGGGAATACACTTTTGCTTATATTGATGACCCATGCAGTGCTACTTACCCATTGATGCAAAAACTGAGACAAGTTCTTGTCGAGCATGCTTTAAGTAATGGCGAAGATGAAAAAGATGCAATCACTTCAATCTTTCAAAAGATTGGAGCTTTTGAAGAGGAATTGAAGGCCATTTTGCCCAAGGAAGTGGAACGTGTGAGGTTGTCGTATGAAAATGGAGATGCAACAATTGAGAATCAGATTAAAGAATGCAGATCTTATCCATTATACAGGTTCGTGAGAGAAGAGCTGGGAACTAAATTGCTAACTGGGGAGAAGGTTATATCTCCCGGAGAAGAGTGCGAAAAGGTTTTTGCGGTATTGTGTCAAGGAAAGATGATTGATCCAATTTTGGAATGCTTGAAGGAGTGGAACGGTGCCCCAATTCCCATCTGTTGA 2133 43.51 MAALQKIDSVESLCHSRSDPLNWGLAAESLKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDSNVLVELAESARARVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDAKEAFKQAGIPTSFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKILTTTSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALSNGEDEKDAITSIFQKIGAFEEELKAILPKEVERVRLSYENGDATIENQIKECRSYPLYRFVREELGTKLLTGEKVISPGEECEKVFAVLCQGKMIDPILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11739486 11741926 + MC01g_new0289 Mch1g0820 675712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0820 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Mch1g0820 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Mch1g0820 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Mch1g0820 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
Mch1g0820 710 FunFam Phenylalanine ammonia-lyase 257 561 - -
Mch1g0820 710 Gene3D - 523 644 IPR023144 -
Mch1g0820 710 PANTHER HISTIDINE AMMONIA-LYASE 16 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Mch1g0820 710 Gene3D - 10 256 IPR024083 -
Mch1g0820 710 Pfam Aromatic amino acid lyase 57 536 IPR001106 -
Mch1g0820 710 CDD PAL-HAL 55 520 IPR001106 -
Mch1g0820 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Mch1g0820 710 FunFam Phenylalanine ammonia-lyase 10 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0818 Mch-Chr1:11730565 Mch1g0820 Mch-Chr1:11739486 0 dispersed
Mch1g0820 Mch-Chr1:11739486 Mch1g0822 Mch-Chr1:11748874 0 dispersed
Mch1g0819 Mch-Chr1:11734712 Mch1g0820 Mch-Chr1:11739486 0 tandem
Mch1g0820 Mch-Chr1:11739486 Mch1g0821 Mch-Chr1:11743346 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0820 K10775 - csv:101218382 1315.83