Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0821 ATGGCACCTGTTCAATTTCAGCAACTTACTCACCAGAATGGTTCAGTAGAGAGCTTATGCATGAGCCATTGTGATGACCCGCTCAATTGGGGCGTGGCGGCTGAGTCCCTCAAGGGAAGTCATCTCGATGAGGTGAAGCGCATGGTAGAGGAATACCGGAGGCCTGTGGTGAAGCTGGGAGGAGAGACCCTCACCATTTCCCAAGTGGCTGCTATTGCCAGTCGAGATTCTGATGTCATGGTGGAGTTGGCCGAGTCGGCGAGAGCCAGTGTTAAAGCAAGTAGCGATTGGGTGATGGAGAGTATGAGTAAAGGGACGGATAGTTATGGTGTTACTACTGGATTTGGTGCCACGTCTCACCGGAGAACTAAGCAAGGTGGAGCTCTTCAGAAGGAGCTGATTCGATTTTTGAATGCTGGGATCTTTGGAAGTGGGGCTGAGTCGAGTCATACTTTGCCTCACACGGCAACGAGGGCCGCCATGTTAGTAAGGATTAATACTCTACTTCAAGGCTACTCGGGCATTAGATTTGAGATTTTGGAAGCTATAACCAAACTTCTCAATCACAACATCACCCCATGCTTACCACTCCGAGGAACAATTACTGCTTCTGGAGATCTAGTTCCTTTGTCATATATAGCTGGACTACTTACAGGTCGTCACAACTCAAAGGCTATTGGTCCCAATGGTGAAACCCTTGATGCAGAGGCTGCTTTTAGACAAGCTGGTATTCCTTCGGGTTTCTTTGAGTTGCAGCCAAAAGAAGGTCTCGCTCTTGTTAATGGTACTGCTGTTGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTGTCAGAAGTTCTTTCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAGTTCACCGATCATTTGACTCATAAATTGAAGCATCACCCTGGTCAGATTGAAGCAGCTGCCATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAGCAGCCAAGAAATTGCATGAAATTGATCCTCTTCAAAAGCCCAAGCAAGACCGTTATGCTCTTAGAACTTCACCCCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCCACAAAGTCTATCGAACGAGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGAAACAAAGCGTTGCATGGAGGCAACTTCCAAGGTACACCCATTGGAGTTTCTATGGACAACACTCGCTTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAATGATTTCTACAACAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCAAGCTTGGATTATGGGTTTAAAGGTACTGAAATTGCCATGGCTTCATATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTCCAGAGTGCTGAGCAACATAACCAAGATGTTAACTCTCTTGGTCTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCTTCCACGTTTTTGGTTGCTCTTTGTCAAGCAATCGACTTAAGGCATTTGGAAGAAAACTTGAAAGACACTGTCAAAAGTACCGTAAGCCAAGTAGCCAAAAAAGTGTTGACTACATCCTCTAATGGCACACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTTGTTGACAGAGAATACACATTTGCTTACATCGATGATCCATGCAGTGCTACTTACCCATTGATGCAGAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAATGGTAATGACGAAAAGAACACAAACACTTCAATCTTCCAAAAGATTGCTGCTTTTGAGGAGGAACTAAAGACAATATTACCAAAGGAAGTCGAAAATGCAAGGTTGGCGTATGAGTATGGAGACTCTAAGATTGAAAACCAGATTAAGGAATGCAGATCCTATCCACTATACAAATTTGTGAGAGAAGAATTGGGAACAAGATTACTAACTGGAGAAAAGGTGACATCTCCTGGAGAAGAGTGCGAGAAGGTATTTACAGCCTTATGTCAAGGAAAAATGGTCGACTCTATCTTAGAATGCTTGAAAGAGTGGGATGGTGCTCCAATTCCTATTTGCTAG 2154 43.41 MAPVQFQQLTHQNGSVESLCMSHCDDPLNWGVAAESLKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIASRDSDVMVELAESARASVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAEAAFRQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKDTVKSTVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGNDEKNTNTSIFQKIAAFEEELKTILPKEVENARLAYEYGDSKIENQIKECRSYPLYKFVREELGTRLLTGEKVTSPGEECEKVFTALCQGKMVDSILECLKEWDGAPIPIC 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11743346 11745740 - MC01g_new0290 Mch1g0821 675713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0821 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841(InterPro)
Mch1g0821 717 CDD PAL-HAL 62 527 IPR001106 -
Mch1g0821 717 FunFam Phenylalanine ammonia-lyase 264 565 - -
Mch1g0821 717 Gene3D Fumarase/aspartase (Central domain) 264 711 - -
Mch1g0821 717 PANTHER HISTIDINE AMMONIA-LYASE 22 717 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Mch1g0821 717 FunFam Phenylalanine ammonia-lyase 18 263 - -
Mch1g0821 717 Gene3D - 530 651 IPR023144 -
Mch1g0821 717 Gene3D - 18 263 IPR024083 -
Mch1g0821 717 FunFam Phenylalanine ammonia-lyase 530 651 - -
Mch1g0821 717 NCBIfam phenylalanine ammonia-lyase 26 707 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Mch1g0821 717 Pfam Aromatic amino acid lyase 64 541 IPR001106 -
Mch1g0821 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0819 Mch-Chr1:11734712 Mch1g0821 Mch-Chr1:11743346 0 dispersed
Mch1g0821 Mch-Chr1:11743346 Mch9g1792 Mch-Chr9:19796163 0 dispersed
Mch1g0820 Mch-Chr1:11739486 Mch1g0821 Mch-Chr1:11743346 0 tandem
Mch1g0821 Mch-Chr1:11743346 Mch1g0822 Mch-Chr1:11748874 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0821 K10775 - csv:101222092 1320.06