Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g0821 | ATGGCACCTGTTCAATTTCAGCAACTTACTCACCAGAATGGTTCAGTAGAGAGCTTATGCATGAGCCATTGTGATGACCCGCTCAATTGGGGCGTGGCGGCTGAGTCCCTCAAGGGAAGTCATCTCGATGAGGTGAAGCGCATGGTAGAGGAATACCGGAGGCCTGTGGTGAAGCTGGGAGGAGAGACCCTCACCATTTCCCAAGTGGCTGCTATTGCCAGTCGAGATTCTGATGTCATGGTGGAGTTGGCCGAGTCGGCGAGAGCCAGTGTTAAAGCAAGTAGCGATTGGGTGATGGAGAGTATGAGTAAAGGGACGGATAGTTATGGTGTTACTACTGGATTTGGTGCCACGTCTCACCGGAGAACTAAGCAAGGTGGAGCTCTTCAGAAGGAGCTGATTCGATTTTTGAATGCTGGGATCTTTGGAAGTGGGGCTGAGTCGAGTCATACTTTGCCTCACACGGCAACGAGGGCCGCCATGTTAGTAAGGATTAATACTCTACTTCAAGGCTACTCGGGCATTAGATTTGAGATTTTGGAAGCTATAACCAAACTTCTCAATCACAACATCACCCCATGCTTACCACTCCGAGGAACAATTACTGCTTCTGGAGATCTAGTTCCTTTGTCATATATAGCTGGACTACTTACAGGTCGTCACAACTCAAAGGCTATTGGTCCCAATGGTGAAACCCTTGATGCAGAGGCTGCTTTTAGACAAGCTGGTATTCCTTCGGGTTTCTTTGAGTTGCAGCCAAAAGAAGGTCTCGCTCTTGTTAATGGTACTGCTGTTGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTGTCAGAAGTTCTTTCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAGTTCACCGATCATTTGACTCATAAATTGAAGCATCACCCTGGTCAGATTGAAGCAGCTGCCATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAGCAGCCAAGAAATTGCATGAAATTGATCCTCTTCAAAAGCCCAAGCAAGACCGTTATGCTCTTAGAACTTCACCCCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCCACAAAGTCTATCGAACGAGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGAAACAAAGCGTTGCATGGAGGCAACTTCCAAGGTACACCCATTGGAGTTTCTATGGACAACACTCGCTTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAATGATTTCTACAACAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCAAGCTTGGATTATGGGTTTAAAGGTACTGAAATTGCCATGGCTTCATATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTCCAGAGTGCTGAGCAACATAACCAAGATGTTAACTCTCTTGGTCTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCTTCCACGTTTTTGGTTGCTCTTTGTCAAGCAATCGACTTAAGGCATTTGGAAGAAAACTTGAAAGACACTGTCAAAAGTACCGTAAGCCAAGTAGCCAAAAAAGTGTTGACTACATCCTCTAATGGCACACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTTGTTGACAGAGAATACACATTTGCTTACATCGATGATCCATGCAGTGCTACTTACCCATTGATGCAGAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAATGGTAATGACGAAAAGAACACAAACACTTCAATCTTCCAAAAGATTGCTGCTTTTGAGGAGGAACTAAAGACAATATTACCAAAGGAAGTCGAAAATGCAAGGTTGGCGTATGAGTATGGAGACTCTAAGATTGAAAACCAGATTAAGGAATGCAGATCCTATCCACTATACAAATTTGTGAGAGAAGAATTGGGAACAAGATTACTAACTGGAGAAAAGGTGACATCTCCTGGAGAAGAGTGCGAGAAGGTATTTACAGCCTTATGTCAAGGAAAAATGGTCGACTCTATCTTAGAATGCTTGAAAGAGTGGGATGGTGCTCCAATTCCTATTTGCTAG | 2154 | 43.41 | MAPVQFQQLTHQNGSVESLCMSHCDDPLNWGVAAESLKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIASRDSDVMVELAESARASVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAEAAFRQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKDTVKSTVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGNDEKNTNTSIFQKIAAFEEELKTILPKEVENARLAYEYGDSKIENQIKECRSYPLYKFVREELGTRLLTGEKVTSPGEECEKVFTALCQGKMVDSILECLKEWDGAPIPIC | 717 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11743346 | 11745740 | - | MC01g_new0290 | Mch1g0821 | 675713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g0821 | 717 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 199 | 215 | IPR022313 | GO:0016841(InterPro) | |
Mch1g0821 | 717 | CDD | PAL-HAL | 62 | 527 | IPR001106 | - | |
Mch1g0821 | 717 | FunFam | Phenylalanine ammonia-lyase | 264 | 565 | - | - | |
Mch1g0821 | 717 | Gene3D | Fumarase/aspartase (Central domain) | 264 | 711 | - | - | |
Mch1g0821 | 717 | PANTHER | HISTIDINE AMMONIA-LYASE | 22 | 717 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Mch1g0821 | 717 | FunFam | Phenylalanine ammonia-lyase | 18 | 263 | - | - | |
Mch1g0821 | 717 | Gene3D | - | 530 | 651 | IPR023144 | - | |
Mch1g0821 | 717 | Gene3D | - | 18 | 263 | IPR024083 | - | |
Mch1g0821 | 717 | FunFam | Phenylalanine ammonia-lyase | 530 | 651 | - | - | |
Mch1g0821 | 717 | NCBIfam | phenylalanine ammonia-lyase | 26 | 707 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Mch1g0821 | 717 | Pfam | Aromatic amino acid lyase | 64 | 541 | IPR001106 | - | |
Mch1g0821 | 717 | SUPERFAMILY | L-aspartase-like | 26 | 717 | IPR008948 | GO:0003824(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g0819 | Mch-Chr1:11734712 | Mch1g0821 | Mch-Chr1:11743346 | 0 | dispersed | |
Mch1g0821 | Mch-Chr1:11743346 | Mch9g1792 | Mch-Chr9:19796163 | 0 | dispersed | |
Mch1g0820 | Mch-Chr1:11739486 | Mch1g0821 | Mch-Chr1:11743346 | 0 | tandem | |
Mch1g0821 | Mch-Chr1:11743346 | Mch1g0822 | Mch-Chr1:11748874 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch1g0821 | K10775 | - | csv:101222092 | 1320.06 |