Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g0822 | ATGGTGATGATCAGATTTCTATTTAAGGATCGTCTTTCTTTCTCATACAGCACAGAGATCTCCACAGATTCTAACTCCATAAATCTCTTTTCTTCTTCTTCTTCCTCTTTGGGTTCTTGTCTTTGTTTCTCTAAAATGGCCCAAGTTGAGACCATCTGCAAGAGCTCCATTCACGACCCACTCAACTGGGGGATGGCGGCTGAGTCTCTCAAGGGAAGTCATCTTGATGAGGTTAAGCGTATGGTGGAAGAGTACCGGAGCCCAGTGGTGAAGCTTGGGGGCGAGACGCTTACCATTTCCCAAGTGGCAGCCATTGCCACCCGTGATTCTGACGTCGTGGTGGAGCTGGCCGAGTCAGCGAGAGCAGGTGTCAAGGCCAGTAGTGATTGGGTGATGGAGAGTATGAATAAAGGGACGGATAGTTATGGTGTCACTACTGGGTTTGGTGCCACGTCTCATAGACGAACCAAACAAGGTGGAGCTCTTCAGAAGGAGTTGATTCGATTCTTGAATGCTGGGATTTTTGGAAGTGGGGCTGAGTCGAGTCATACTCTACCTCACTCAGCAAGTCGAGCGGCGATGTTAGTCAGAATAAATACTCTCCTTCAAGGTTACTCTGGCATTCGATTTGAGATCTTAGAAGCCATTGCTAGTCTTCTCAACCACAATGTCACTCCCTGTTTGCCTCTTAGAGGGACAATCACTGCTTCTGGAGATTTGGTCCCTTTGTCATACATCGCTGGATTACTCACTGGGAGGCCAAATTCCAAGGCTATTGGATCTAATGGTGAAACTCTTGATGCGAAGGAAGCATTCAAACAAGCTGGTATTTCTTCTGACTTCTTTGAGTTGCAACCCAAGGAAGGTCTTGCTCTTGTCAATGGTACTGCTGTTGGTTCTGGATTGGCTTCCATCGTTCTCTTTGAGGCAAATATTTTAGCTGTTTTGTCAGAAATTCTTTCAGCTATTTTTGCTGAGGTAATGCAAGGAAAGCCTGAATTCACCGATCATTTGACCCATAAGCTTAAACATCACCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGGAGTTCTTATATGAAAGCAGCTAAGAAATTGCATGAAATTGATCCTCTCCAAAAGCCCAAGCAAGATCGTTACGCTCTTAGAACTTCACCCCAATGGTTGGGTCCTTTGATTGAAGTCATTCGATTTTCCACAAAGTCAATCGAGCGAGAGATCAATTCGGTTAATGATAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTACATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGTTTGGCTATTGCGTCAATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTCGTCAATGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCTGCGAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCGTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAACCATGTTCAAAGTGCTGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGAAAAACAGCTGAAGCCATTGATATTTTGAAACTCATGTCGTCTACATTTTTGGTTGCACTTTGCCAAGCAATCGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACCGTAAAAAGTACTGTAAGTCAAGTAGCCAAGAAAGTGTTGACCACATCCTCTAATGGCACACTTCACCCATCAAGATTTTGCGAAAAAGACTTATTGAAGGTTGTCGATAGGGAGTACACTTTTGCTTATGTTGATGATGCATGTAGTGCTACGTATCCATTGATGCAAAAGCTAAGGCAAGTTCTTGTTGAGCATGCACTCACAAATGGCGATGACGAAAAGAACACAAACACTTCAATCTTCCAAAAGATTAGTGCTTTTGAAGAGGAACTTAAGGCAATTTTATCAAAGGAAGTTGAAAATGCAAGGTTGGCATTTGAGAGTGGAAATGCAAAAATTAAGAACCAAATTGAGGAATGCAGATCTTATCCATTATATAGATTTGTGAGGGAAGAGTTGGGAACAAGTTTGCTAACAGGTGAAAAAGTAATATCTCCGGGAGAAGAGTGTGAAAAGATATTCACAACTTTATGCCAAGGAAAGATGACCGATTCTATCTTAGAGTGTTTGAAAGAGTGGAACGGTGCTCCCATTCCCATATGCTAG | 2253 | 42.52 | MVMIRFLFKDRLSFSYSTEISTDSNSINLFSSSSSSLGSCLCFSKMAQVETICKSSIHDPLNWGMAAESLKGSHLDEVKRMVEEYRSPVVKLGGETLTISQVAAIATRDSDVVVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHTLPHSASRAAMLVRINTLLQGYSGIRFEILEAIASLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGSNGETLDAKEAFKQAGISSDFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALTNGDDEKNTNTSIFQKISAFEEELKAILSKEVENARLAFESGNAKIKNQIEECRSYPLYRFVREELGTSLLTGEKVISPGEECEKIFTTLCQGKMTDSILECLKEWNGAPIPIC | 750 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11748874 | 11751378 | - | MC01g_new0291 | Mch1g0822 | 675714 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g0822 | 750 | FunFam | Phenylalanine ammonia-lyase | 297 | 603 | - | - | |
| Mch1g0822 | 750 | SUPERFAMILY | L-aspartase-like | 59 | 750 | IPR008948 | GO:0003824(InterPro) | |
| Mch1g0822 | 750 | Gene3D | Fumarase/aspartase (Central domain) | 297 | 745 | - | - | |
| Mch1g0822 | 750 | FunFam | Phenylalanine ammonia-lyase | 51 | 296 | - | - | |
| Mch1g0822 | 750 | PANTHER | HISTIDINE AMMONIA-LYASE | 55 | 750 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
| Mch1g0822 | 750 | Gene3D | - | 563 | 684 | IPR023144 | - | |
| Mch1g0822 | 750 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 232 | 248 | IPR022313 | GO:0016841(InterPro) | |
| Mch1g0822 | 750 | Pfam | Aromatic amino acid lyase | 97 | 573 | IPR001106 | - | |
| Mch1g0822 | 750 | Gene3D | - | 51 | 296 | IPR024083 | - | |
| Mch1g0822 | 750 | FunFam | Phenylalanine ammonia-lyase | 563 | 684 | - | - | |
| Mch1g0822 | 750 | CDD | PAL-HAL | 95 | 560 | IPR001106 | - | |
| Mch1g0822 | 750 | NCBIfam | phenylalanine ammonia-lyase | 59 | 740 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g0820 | Mch-Chr1:11739486 | Mch1g0822 | Mch-Chr1:11748874 | 0 | dispersed | |
| Mch1g0822 | Mch-Chr1:11748874 | Mch9g1792 | Mch-Chr9:19796163 | 0 | dispersed | |
| Mch1g0821 | Mch-Chr1:11743346 | Mch1g0822 | Mch-Chr1:11748874 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch1g0822 | K10775 | - | csv:101222092 | 1289.25 |