Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0854 ATGCTGCCCACACCCTGCATTCTGCTGCTAACTTTCCTACTTCCCTCCCTCTCCCGACTCGGTGCCGCGCTCAACTTCACTCTCCCCGGCCAGCACCCGAGCCCTGAACTGGTTGCTCAAGAAGTTTACAGGAAAGTGAATGCTTCGGTAACGAGAAGGCACTTGCTCCAAATTTCCGAGAAAGATGAATCTTCATCTTCATCCTGCTACACGGGCAACCCAATCGACGACTGCTGGAAATGCGATCCAAATTGGCCCAACAACCGGCAGCGCCTCGCCGACTGCGCGATAGGGTTCGGCCAGTACGCTCTCGGCGGAAAGAACGGCGAGTTCTACATAGTGACAGACGACTCCGACGACGATCCGGTCAATCCAAAGCCCGGAACATTACGATACGCCGTGATTCAGCCGCAACCTCTCTGGATCGTCTTCCCGGCCAACATGCTCATCAAACTCTCACAGGAGCTCATCTTCAACAGCTACAAAACCCTCGACGGACGCGGCGCCAATGTCCACATCGTCGGAGGCGGCTGCATCACCTTGCAGTACATAAGCAACGTCATCATCCACAACATCCACATCCACCATTGTTATCCATCAGGGAACACCATGGTCCGGTCGAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATCTCGATCTTCGGGTCGAAGGACATATGGATTGACCATTGCTCCCTCTCGCATTGCAAAGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACAATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGCTGCTGGGTCACAGCGACAGCTACTTGCCGGACTCCGGAATGCAGGTGACGATAGCGTTCAACCACTTCGGGGAGAAGCTGGTGCAGAGGATGCCGCGTTGCCGGCGAGGGTACATCCACGTCGTCAACAACGACTTCACGCAGTGGGAAATGTACGCCATCGGCGGCAGCGGGAATCCGACGATCAACAGCCAGGGCAACCGCTACACTGCCCCATACGACCGCAACGCGAAGCAGGTGACCAAGCGCGTGGAGACCGCCGAGTCCGAGTGGCGCGCCTGGAACTGGCGCTCCGACGGCGACATCCTCGTCAACGGCGCCTTCTTCGTCACTTCCGGCCAAGGCCTCGAGGTCAAGTACGAGAAGGCGTACAGCGTGGAGCCCAAGTCCGCCGCCCTCATCGACCAGCTCACCTGGCACGCCGGCCCTCTCGGCGTCGGCGGCAGGGACAACAATTTGGGCATGTGGACCACTGGCCCCAACGGCGGAGCCTTCGCGCTCGGCTCCGGCCCGGAATACACTGACGACATGTCGGAAAGCTCCCCATATTATTGTTTCCTCTTCTCTGTTTTGTTGTGTTATTGTTGTGCGTTGGCACTCACATTAATTGTGCTATGA 1425 57.12 MLPTPCILLLTFLLPSLSRLGAALNFTLPGQHPSPELVAQEVYRKVNASVTRRHLLQISEKDESSSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDPVNPKPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKQVTKRVETAESEWRAWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGAFALGSGPEYTDDMSESSPYYCFLFSVLLCYCCALALTLIVL 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11940801 11949808 - MC01g0562 Mch1g0854 675746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0854 474 PANTHER PECTATE LYASE 18-RELATED 45 415 IPR045032 GO:0030570(InterPro)
Mch1g0854 474 SMART amb_all 147 344 IPR002022 -
Mch1g0854 474 Gene3D - 72 414 IPR012334 -
Mch1g0854 474 Pfam Pectate lyase 157 336 IPR002022 -
Mch1g0854 474 SUPERFAMILY Pectin lyase-like 67 397 IPR011050 -
Mch1g0854 474 FunFam Pectate lyase 72 414 - -
Mch1g0854 474 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Mch1g0854 474 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Mch1g0854 474 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Mch1g0854 474 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Mch1g0854 474 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Mch1g0854 474 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Mch1g0854 474 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Mch1g0854 474 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0854 Mch-Chr1:11940801 Mch7g0880 Mch-Chr7:13370018 4.07E-186 dispersed
Mch1g0854 Mch-Chr1:11940801 Mch4g2019 Mch-Chr4:22498721 4.76E-217 wgd
Mch1g0854 Mch-Chr1:11940801 Mch9g1816 Mch-Chr9:19952755 1.03E-221 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0854 K01728 - csv:101203012 847.04