Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0862 ATGCCGATCCGTAACATTGCCATCGGAAGGCCGGAGGAGGCGACCCACCCGGACGCCTTGAAGGCCGGTTTGGCCGAGTTTATTTCCACCTTGATTTTCGTATTCGCCGGCCAAGGTTCCGGCATAGCCTTCAGCAAGCTCACGGCCGGCGGCGCCGCCACTCCGGCCGGCCTCATCTCCGCCTCCATCGCCCACGCCTTCGCCCTCTTCGTCGCCGTCTCCGTCGGCGCCAACATCTCCGGTGGCCACGTCAACCCCGCCGTCACCTTCGGCGCCTTCGTCGGCGGCAACATCACCCTCCTACGTGGCCTCGTCTACTGGGTCGCCCAGCTCCTCGGATCCGTCGTCGCTTGCTTGCTCCTCGAGTTCGTTACCGGCATGCCCACCGGAAGCTTCGCCCTTTCGGCTGGAGTTGGTGAAGTAAACGCCTTGGTTTTCGAGATCGTGATGACGTTCGGATTGGTGTACACGGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCCATCGCGATCGGTTTCATCGTGGGAGCTAATATTCTGGCCGGCGGAGCGTTCACCGGAGCGTCGATGAACCCGGCGGTGGCATTTGGGCCGTCGGTGGTGAGCTGGTCGTGGGACAGCCACTGGGTCTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTTGCTGGGCTCATCTACGAGTTCATTTTCATCTCCCACTCCCACGAGCAGCTGCCCACCACCGATTACTAA 753 62.15 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTAGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGLVYWVAQLLGSVVACLLLEFVTGMPTGSFALSAGVGEVNALVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDSHWVYWAGPLIGGGLAGLIYEFIFISHSHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12020213 12022001 - MC01g0570 Mch1g0862 675754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0862 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0862 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Mch1g0862 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0862 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Mch1g0862 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0862 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0862 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0862 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0862 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0862 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g0862 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Mch1g0862 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Mch1g0862 250 FunFam Probable aquaporin TIP1-1 4 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0862 Mch-Chr1:12020213 Mch2g0356 Mch-Chr2:2667614 9.06E-34 dispersed
Mch3g1539 Mch-Chr3:17444237 Mch1g0862 Mch-Chr1:12020213 2.67E-106 transposed
Mch4g2111 Mch-Chr4:23189488 Mch1g0862 Mch-Chr1:12020213 2.73E-120 transposed
Mch6g1736 Mch-Chr6:19767608 Mch1g0862 Mch-Chr1:12020213 3.69E-103 transposed
Mch6g2615 Mch-Chr6:27948766 Mch1g0862 Mch-Chr1:12020213 6.24E-55 transposed
Mch8g0338 Mch-Chr8:2375034 Mch1g0862 Mch-Chr1:12020213 4.69E-86 transposed
Mch8g1072 Mch-Chr8:7599888 Mch1g0862 Mch-Chr1:12020213 3.57E-28 transposed
Mch1g0862 Mch-Chr1:12020213 Mch5g1710 Mch-Chr5:17824641 1.28E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0862 K09873 - csv:101204225 454.907