Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0867 ATGACGATTCCATCGCTAGGCCTGTGGGCGTGTCTGGTCTTCCATGCCATGTTGTTGCTTATTGTCCATGCAAATGCAAATGCAAATTTCTCGTTTGGGCATGCGCTTCGTCCAGTGCACAGGCAATTAGGTGCGCAGACTACTACTAAGCGTCACCGCCCGCCGTTCAAGCCCGGCCCTTGGAAGACTGCTCGTGCCACTTTCTATGAGGGCGGCTCGGGAACGTTCGGAGGTGCATGTGGGTACGAGGACGTGGAAAAGGAAGGGTATGGGATGGCGACCGTAGCGGTGAGCCCGGCGCTGTTCAACAACGGCCAGACTTGCGGCGCCTGCTTCGAGATCAAATGCGTTGAGGATCAGCAGTTGTGCAAGCCCGGGCAGCCGTCGCTCGTTGTAACGGCCACCAACCACTGCCCTCCCAATCACAACCTTGCCAATGACGATGGCGGATGGTGCAATCCCCCGCAAGAGCACTTCGATATAGCCAAGCCTGCTTTCCCCAATATTGCAGACTACAAGGCTGGCGTTGTTCCCATCAACTACCGCAGGGTTCCGTGCAAAAAGCAAGGAGGAATTCGATTCACAATAACTGGGAATCCATACTACAACGAAGTGTTGGTGTGGAACGTGGGAGGGGCTGGAGACGTGACCAGCGTCCAAGTGAAGGGCCACCGCAAGCTCAAATGGACCACCATGACTCGTATGTGGGGTCAGAAATGGACCACCAACGCCATGCTCGTCGACGAGTCCCTCACCTTCCGAGTCCGAACCAGCGACGGCCGGTTCTCAACTTCTTGGCATGTCGCTCCCTCCAATTGGCAGTTTGGCCGGGTTTACTCGGTCAATTTCTCCATTAAAAACAATTGTCCATTCCAAATCTGGCCTGGAACCTTAACGGGTTCCGGCAATCAACTGTCAACAACTGGGTTTGAATTAGCATCTAGTTCGACCACAACAGCGACTGTTTCTCCACCGTGGTCCGGTCGATTTTGGGCTCGAACCCACTGCTTCACAGGCGAGAGTGGAAAATTCTCATGTGGAACTGCCGACTGCGCCTCCGGCCAAGTCACATGTAATGGTGCGGGTGCAATTCCACCAGCTAGCCTTGTCGAATTCACCATAGCCCCAAACGGTGGCCAAGATTTCTTCGACATCAGCCTCGTCGATGGCTTCAACTTGCCCGTCTCGGTGGTTCCACTCGGCGGGTCGGGCGAGTGCGCAACGGTAACTTGTGTCGGAAATGTAAATTCTGTTTGTCCGCCGGAACTAGCCGTTAGAGGGCAAGATGGAGCAGTGGTAGCATGTAAAAGTGCTTGTATGGCTTTCAACACGCCGGAATTCTGCTGCAGTGGCGACCATAATCAGCCGCAAACTTGTCCGCCGACGAGATACTCGATGATATTCAAGAACCAGTGTCCTCAAGCTTATAGTTATGCTTACGATGATAGGACTAGTACTTTTACGTGCTCGGGTGGAGCCGATTACGCCATCACATTTTGTCCT 1503 53.83 MTIPSLGLWACLVFHAMLLLIVHANANANFSFGHALRPVHRQLGAQTTTKRHRPPFKPGPWKTARATFYEGGSGTFGGACGYEDVEKEGYGMATVAVSPALFNNGQTCGACFEIKCVEDQQLCKPGQPSLVVTATNHCPPNHNLANDDGGWCNPPQEHFDIAKPAFPNIADYKAGVVPINYRRVPCKKQGGIRFTITGNPYYNEVLVWNVGGAGDVTSVQVKGHRKLKWTTMTRMWGQKWTTNAMLVDESLTFRVRTSDGRFSTSWHVAPSNWQFGRVYSVNFSIKNNCPFQIWPGTLTGSGNQLSTTGFELASSSTTTATVSPPWSGRFWARTHCFTGESGKFSCGTADCASGQVTCNGAGAIPPASLVEFTIAPNGGQDFFDISLVDGFNLPVSVVPLGGSGECATVTCVGNVNSVCPPELAVRGQDGAVVACKSACMAFNTPEFCCSGDHNQPQTCPPTRYSMIFKNQCPQAYSYAYDDRTSTFTCSGGADYAITFCP 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12068414 12076682 + MC01g0574 Mch1g0867 675759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0867 501 CDD DPBB_EXPA_N 60 186 - -
Mch1g0867 501 SMART dpbb_1 94 181 IPR007112 -
Mch1g0867 501 ProSiteProfiles Thaumatin family profile. 280 501 IPR001938 -
Mch1g0867 501 Gene3D - 190 283 IPR036749 -
Mch1g0867 501 Pfam Expansin C-terminal domain 192 270 IPR007117 -
Mch1g0867 501 SMART tha2 283 501 IPR001938 -
Mch1g0867 501 FunFam THAUMATIN-LIKE PROTEIN 1 281 501 - -
Mch1g0867 501 SUPERFAMILY Barwin-like endoglucanases 60 209 IPR036908 -
Mch1g0867 501 Gene3D Thaumatin 284 501 IPR037176 -
Mch1g0867 501 Gene3D - 45 187 IPR036908 -
Mch1g0867 501 SUPERFAMILY Osmotin, thaumatin-like protein 282 501 IPR037176 -
Mch1g0867 501 PRINTS Expansin signature 149 166 IPR002963 GO:0009664(InterPro)
Mch1g0867 501 PRINTS Expansin signature 89 103 IPR002963 GO:0009664(InterPro)
Mch1g0867 501 PRINTS Expansin signature 166 179 IPR002963 GO:0009664(InterPro)
Mch1g0867 501 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Mch1g0867 501 PRINTS Expansin signature 190 202 IPR002963 GO:0009664(InterPro)
Mch1g0867 501 PRINTS Expansin signature 116 127 IPR002963 GO:0009664(InterPro)
Mch1g0867 501 PRINTS Expansin signature 238 259 IPR002963 GO:0009664(InterPro)
Mch1g0867 501 PRINTS Expansin signature 130 140 IPR002963 GO:0009664(InterPro)
Mch1g0867 501 PRINTS Expansin signature 267 283 IPR002963 GO:0009664(InterPro)
Mch1g0867 501 Pfam Lytic transglycolase 95 181 IPR009009 -
Mch1g0867 501 SUPERFAMILY PHL pollen allergen 188 279 IPR036749 -
Mch1g0867 501 ProSitePatterns Thaumatin family signature. 342 358 IPR017949 -
Mch1g0867 501 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576(InterPro)
Mch1g0867 501 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576(InterPro)
Mch1g0867 501 PRINTS Expansin/Lol pI family signature 60 75 IPR007118 GO:0005576(InterPro)
Mch1g0867 501 PRINTS Expansin/Lol pI family signature 98 116 IPR007118 GO:0005576(InterPro)
Mch1g0867 501 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576(InterPro)
Mch1g0867 501 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 281 IPR007117 -
Mch1g0867 501 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 77 191 IPR007112 -
Mch1g0867 501 Pfam Thaumatin family 287 501 IPR001938 -
Mch1g0867 501 CDD TLP-PA 283 500 - -
Mch1g0867 501 PANTHER EXPANSIN-A15 27 280 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0867 Mch-Chr1:12068414 Mch2g0893 Mch-Chr2:6077979 2.43E-99 dispersed
Mch1g0867 Mch-Chr1:12068414 Mch9g1554 Mch-Chr9:17825037 4.16E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0867 - - - 0.0