Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0900 ATGGAAATGCCTGGAAGGAGGTCGGATTACACGCTTTTAAGCCAAATTCCCGACGAGGAGGTTGGAACAGGAGCTTCCACTTCGTTTTATGAGTCATTAATAGCCGATGGAAACATTAACAAGGGAAGGGCCGATAGAGTCTTTGATTGGGATGGGAGTGGTGATCACAAGATAAACACGCAATCGAATCGGATAGGGAACCTGTATTCATGGATTGGGTCGCAGAGGCATTCTACTGGAAGCAGCTTCGATGAAAGCTCTCTTTCCGGGGACTACTACGCACCTACGCTCTCAAGCGCAGCAGAAAATGAGATCAACGCATTGGGATATATCCAGGGTGATGAGCTAAGAGTAAAAGTGGGAAGTGGAGGTTCGTCAGGGAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTATCAGTTGCAGTTGGCCTTGGCTCTCAGGCTGTCTTCAGAGGCCACGTGCGTCCATGATCCCAACTTTATGGATCCGATGCCAGACGACGCAGCGTTAAGATCGTCGTCCAGTTCAGCTGAGGCCATATCGCATCGATTCTGGGTAAATGGATGCATGTCATACTTTGAGAAAGTGCCAGATGGTTTTTATCTAATTCATGGCATGGACCCTTATGTATGGTCTTTGTGCACCAATCTGCAAGACCATGGCCGTATACCATCATTTGAATCTCTGAAGGCAGTTTATTCCAGCATTGATGCTTCGATTGAAGTAGTTTTGATAGATCAGAAAAGTGACCCTAGCTTTAAGGAACTGCTAAACAGGGTGCATAATATTTCTTCTAGCGGTTTAACCACAAAAGAAGTTGCAGATCATTTAGCAAAGCTGGTGTGCAATCATATGGGGGGTTCAATTTCCAAGGGAGAAGATGACTTGGTTTCCTCCTGGAGGGAATGCAGTGATGACTTAAAAGAATGTTTTGGATCTATCGTGATTCCCTTGTGCAGCTTATCTGTTGGCCTCTGTAGACATCGTGCTCTTTTATTCAAAGTACTGGCTGATTCAATTGATTTGCCCTGTCGAATTGCCAGGGGCTGTAAATATTGTTCTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTTGGGCTTCATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGTCAATCACTTAATATTGTATTTGACGAAGATTCTTCAGGGAATGTTGTATCTGGGAAGGATGCCCCAGTTTCTGTCTATCAAAGGCCATTTAATAGGAAGGATGTAGATGGTAAAAACACAGTGCTTACTGGTGACAGTGATGAAAGTTCTCAGTTATTGAACCCAAAAACTTCTCAACCAAGTGCTACAGATAGAAATTCTGAGCAATTTAGATCACGTGATACTTCTCAATATAGTGTACTGTCTACCTCTTTTTTCGAAAAAGGAGTCCCTATAAACCTGACCTCGCAGATTGGTTCCAGAGATTCTCAACCTCTCTTAGCATTGTCTCATCTAAGGACGGATCCTACTAGCAATTTATCATTTGTTGAGGGTAGTCAACTGGTTAAAAAGCCGAATGAGCTCTCCCTTGGGATAGAAGATTTAGTTATTCCATGGCAAGATCTTGCTTTGAGAGAGAAAATTGGAGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCACGGCTCGGATGTTGCTGTGAAGATTCTGATGGAACAAGACTTACATGCAGAACGTTTTGATGAATTCCTTAGGGAGGTGGCCATAATGAAAAGTCTACGACATCCAAACATTGTTCTCTTTATGGGTGCAGTCACCGAGCCTCCAAACTTGTCCATTGTCACGGAATACTTATCAAGAGGTAGCTTGCACAGGCTTTTGCATAGACCTGGGGCAAGAGAAGTATTAGATGAGAGACGTCGGTTGAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGTAACCCTCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTGGTCGACAAAAAGTACACAGTAAAGGTTTGTGATTTTGGGCTTTCACGCTTAAAGGCAAACACATTTCTTTCGTCAAAATCAGCTGCTGGGACGCCCGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCGTCAAATGAGAAATCAGACGTTTATAGCTTTGGTGTTATACTGTGGGAGCTTGCTACATTGCAGCAACCATGGAGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTTGGCTTTAAAGGCAACAGGCCTGAGATCCCACGTGATTTAAATCCTCGAGTTGCTACAATCATAGAGGCTTGCTTTGCCGGTGAGCCCTGGAAACGTCCATCCTTTTATGAAATAATGGAATCTTTGAAGCCGTTGATCAAACCTACTACGCCTCATCAAGTTCGCACAAACATG 2535 43.87 MEMPGRRSDYTLLSQIPDEEVGTGASTSFYESLIADGNINKGRADRVFDWDGSGDHKINTQSNRIGNLYSWIGSQRHSTGSSFDESSLSGDYYAPTLSSAAENEINALGYIQGDELRVKVGSGGSSGKSWAQQTEESYQLQLALALRLSSEATCVHDPNFMDPMPDDAALRSSSSSAEAISHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQDHGRIPSFESLKAVYSSIDASIEVVLIDQKSDPSFKELLNRVHNISSSGLTTKEVADHLAKLVCNHMGGSISKGEDDLVSSWRECSDDLKECFGSIVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIARGCKYCSRDDASSCLVRFGLHREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEDSSGNVVSGKDAPVSVYQRPFNRKDVDGKNTVLTGDSDESSQLLNPKTSQPSATDRNSEQFRSRDTSQYSVLSTSFFEKGVPINLTSQIGSRDSQPLLALSHLRTDPTSNLSFVEGSQLVKKPNELSLGIEDLVIPWQDLALREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKSLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWSNLNPAQVVAAVGFKGNRPEIPRDLNPRVATIIEACFAGEPWKRPSFYEIMESLKPLIKPTTPHQVRTNM 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12340518 12349872 + MC01g0602 Mch1g0900 675792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0900 845 CDD STKc_MAP3K-like 581 829 - -
Mch1g0900 845 PRINTS Tyrosine kinase catalytic domain signature 800 822 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0900 845 PRINTS Tyrosine kinase catalytic domain signature 649 662 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0900 845 PRINTS Tyrosine kinase catalytic domain signature 756 778 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0900 845 PRINTS Tyrosine kinase catalytic domain signature 690 708 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0900 845 PRINTS Tyrosine kinase catalytic domain signature 737 747 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0900 845 MobiDBLite consensus disorder prediction 462 501 - -
Mch1g0900 845 FunFam Serine/threonine-protein kinase isoform 1 566 653 - -
Mch1g0900 845 FunFam Serine/threonine-protein kinase CTR1 654 839 - -
Mch1g0900 845 ProSitePatterns Protein kinases ATP-binding region signature. 581 602 IPR017441 GO:0005524(InterPro)
Mch1g0900 845 Pfam Protein tyrosine and serine/threonine kinase 576 829 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0900 845 Gene3D Transferase(Phosphotransferase) domain 1 654 843 - -
Mch1g0900 845 Pfam Ethylene-responsive protein kinase Le-CTR1 177 383 - -
Mch1g0900 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0900 845 SUPERFAMILY Protein kinase-like (PK-like) 558 829 IPR011009 -
Mch1g0900 845 SMART serkin_6 575 833 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0900 845 MobiDBLite consensus disorder prediction 468 501 - -
Mch1g0900 845 PANTHER SERINE-THREONINE PROTEIN KINASE 154 830 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Mch1g0900 845 Gene3D Phosphorylase Kinase; domain 1 568 653 - -
Mch1g0900 845 ProSiteProfiles Protein kinase domain profile. 575 833 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0714 Mch-Chr11:4713349 Mch1g0900 Mch-Chr1:12340518 9.70E-199 dispersed
Mch1g0900 Mch-Chr1:12340518 Mch3g1592 Mch-Chr3:17863029 6.98E-133 dispersed
Mch11g0410 Mch-Chr11:2575785 Mch1g0900 Mch-Chr1:12340518 4.71E-135 transposed
Mch6g1662 Mch-Chr6:18444872 Mch1g0900 Mch-Chr1:12340518 2.98E-142 transposed
Mch7g1239 Mch-Chr7:15937435 Mch1g0900 Mch-Chr1:12340518 1.10E-99 transposed
Mch1g0900 Mch-Chr1:12340518 Mch5g1658 Mch-Chr5:17396094 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77116 PF07714 PK_Tyr_Ser-Thr 6.70E-69 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0900 K14510 - csv:101208800 1427.15