Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0924 ATGGCGGAGGAGCACAGATGCCAAGCACCTGAGGGCCACCGTTTCTGCGCCAATAATTGCGGCTTCTTCGGCAGCCCAGCCACCATGGATCTCTGCTCCAAATGTTACAGAGACTACCGCCTCAAAGAGCAAGAACAAGCTTCCACCAAATCAACGATTGAAGCCGCTCTCTCAGCCTCATCTCCTTCCCCCTCCTCTTCTCCAATCGATCCTCCCCCTGTCTCGCCTGTTATAGCCTTGACCTCGCCGGAAACAGCCACAGATCTGACGGTCCCGCCCGTCGCGGCGGCCGGATCTGAGGCGGCGAACCAGCCAAACCCTAACCCTAACCCGAACCCGACCCGGTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACGGGGTTCAGATGCAGATGCGGAACCACGTTCTGTGGGGTTCATAGGTACCCGGAGAAGCACGGCTGCACGTTCGATTTCAAGTCGATCGGAAGAGAGGAGATCGCCCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAGAGGATTTGA 528 57.77 MAEEHRCQAPEGHRFCANNCGFFGSPATMDLCSKCYRDYRLKEQEQASTKSTIEAALSASSPSPSSSPIDPPPVSPVIALTSPETATDLTVPPVAAAGSEAANQPNPNPNPNPTRCSSCRKKVGLTGFRCRCGTTFCGVHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12582542 12583914 + MC01g0617 Mch1g0924 675816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0924 175 PANTHER AN1-TYPE ZINC FINGER PROTEIN 14 175 IPR050652 -
Mch1g0924 175 SUPERFAMILY AN1-like Zinc finger 101 170 IPR035896 -
Mch1g0924 175 Pfam AN1-like Zinc finger 116 152 IPR000058 GO:0008270(InterPro)
Mch1g0924 175 ProSiteProfiles Zinc finger AN1-type profile. 110 156 IPR000058 GO:0008270(InterPro)
Mch1g0924 175 FunFam Zinc finger AN1-type containing 6 92 171 - -
Mch1g0924 175 Gene3D - 1 67 - -
Mch1g0924 175 Pfam A20-like zinc finger 16 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Mch1g0924 175 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Mch1g0924 175 Gene3D - 93 171 IPR035896 -
Mch1g0924 175 MobiDBLite consensus disorder prediction 48 64 - -
Mch1g0924 175 MobiDBLite consensus disorder prediction 46 115 - -
Mch1g0924 175 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Mch1g0924 175 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Mch1g0924 175 SMART AN1_Zf_4 116 153 IPR000058 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0924 Mch-Chr1:12582542 Mch6g2576 Mch-Chr6:27617903 9.01E-49 dispersed
Mch1g0924 Mch-Chr1:12582542 Mch2g0247 Mch-Chr2:1844281 3.86E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0924 - - - 0.0