Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0971 ATGATGTATGGGCCTGGGCCTGGGCCGTGGTTGCGTAGTTTTCTTCTCAATTTGTCCGTGATGTCTGGCAGTGGCACCATTTTTGGATATTTGAAGATAGATAGAACTTATCCTCTGAAATTCTGTTCCTCACCACTTCTCAGATTCCCTCTCCTTCCCCAATGCAAGTTCGCTTTCAGAAAATGTAGTTCCTCCAAAACCATGCAATTGCTACTGCAAGACGGAGCTCTCCAATTTCTCTCCAATGGCAGATTCAAATTCATCCACTCTTCTCCTTCCCCATTTTTCCCCTCAATTTCCCGCTCCTCCACTACCCTCCAACAATTCCCCTTCCTCTCCAATGCCACAATCTCTTTCGTTTTCCCCTCTAAACTGCCACCTCGGAGCCCCGCCGTTCCTCCCCTCTCGCCGCCGCCACTGCCCCACCCCGACCCTCGCACCGAGTTCCAGGAGAAAATGCTCTTCCTCGACTCCATCGGCATCGACTTCTTCTCCGTCATCAAAGACCATCCTCCCGTCGCCGCCGCCTCCCTCGCTGACATCAGATCCGCTGTCGATTTCATGACCTCCATGAACTTTACCGCCGTCGAGTTCCGGAGAATCGTCGGTATGTGCCCCGAGATCCTCACCTCTCGCGCCGCCGATCTCGTCCCGGTCTTCACCTTCCTCCTCCGCGAGGCTCGAGTCGCCGGCTCCGACATCAAGCGCGTCGTAAATCGCCGCCCTAGGTTACTCGCGTGCAGCGTCAAGGATCGGCTCCGTCCAACTCTCTACTTCCTACAAAGCATCGGCATATCGGAGGTACACAAACACACCTCATTACTCTCCTGTAGCGTCGAGGAGAAGCTGATTCCGAGAATCGAATTCTTCGAGAACCTAGGGTTTTCCCGCCGGGACGCCGTGATAATGTTCCGGCGATTCCCGCAGCTGTTCTGCTACAGCATCAAGGAGAATCTGGAGCCGAAACTGAATTACTTCGTGGTGGAAATGGGGAGGGAACTGAAGGAATTGAAGGAGTTTCCGCATTACTTTTCGTTTAGCTTAGAGCATAGGATTAAGCCGAGACATCAAAGCTGTGTGGAGAAGGGAGTATGTTTCCCATTGCCGGATTTGTTGAAAACCAGTGAGATGAAATTCCGGGAAAAATTGGAGAAACTAAAGCAGAAGGGTGCTATGTATCACAATATGGTTGAATCTAATGACTGCATTCATGATCAAGGATCTTCCAAAGATGCTCTAAGTTCTATACAGACACCCGTGTCTGCAAAAGGAGGAAGGGTGTACAAGTCAAAGGCTTCAAGGAGAACTACATCTGGGCCTCAAACACCAATCTCAGACACTAGCTCTTTTTCATCTCTTACTCCAGCTGGAAGCTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAACGCTGCAGAAACTTTGAAGGTGCAGAAGAGGAGGATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAATATAATATACTGGAAGGGATTCAATGCACAAATTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGACGACAAGATAAGAGGATTGCAGGAAAGATTGAGGAATCTGAGTGAAGATGAAAATGTCCAAAAATGGCTCTACGTGACCGAAGAAGACATTAAAAACTTGCCTTGCTTCCAGAATGAAACCCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATCCACAGAGAAGATATAGAATAGTTCTTAGGAGTACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTCGAGGAGAAGTTTGAGGAGATGAATGTGGTCCCACCACCTAGTAGCTTCCTACATGCTTCAAGTTCAGGATCTAACGAACATCTAGCTACAGAAGTAATCATTGGGGAGAATAGTAGAAAGGAAACAGAACCTCCGGCACATCTGTCCCAGCACAGCAGCAGCTGTGATGTGAACGGTTCAAACGAGTTTCCTGGTGGAATCATGAAGATAATTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCAGACGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCCACAGCAGATATTGCATGGGATCAGTCAGATATGGTTCCTCATGACTTTGTAATATCTGATGTTAGTGCCCAAAGGTCAAGACCAGCAAGCCCACGTCCAGAGTCGGCCGAAGCGCCATACAATGCTAACTTAAGACAGAGGTGA 2370 46.79 MMYGPGPGPWLRSFLLNLSVMSGSGTIFGYLKIDRTYPLKFCSSPLLRFPLLPQCKFAFRKCSSSKTMQLLLQDGALQFLSNGRFKFIHSSPSPFFPSISRSSTTLQQFPFLSNATISFVFPSKLPPRSPAVPPLSPPPLPHPDPRTEFQEKMLFLDSIGIDFFSVIKDHPPVAAASLADIRSAVDFMTSMNFTAVEFRRIVGMCPEILTSRAADLVPVFTFLLREARVAGSDIKRVVNRRPRLLACSVKDRLRPTLYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDAVIMFRRFPQLFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLEHRIKPRHQSCVEKGVCFPLPDLLKTSEMKFREKLEKLKQKGAMYHNMVESNDCIHDQGSSKDALSSIQTPVSAKGGRVYKSKASRRTTSGPQTPISDTSSFSSLTPAGSCRYDSSLGLLTKKFINLIKQARDGILDLNNAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNAQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRGLQERLRNLSEDENVQKWLYVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEVIIGENSRKETEPPAHLSQHSSSCDVNGSNEFPGGIMKIIPSEVDNDADYWLLSDAEVSITDMWRTDSTADIAWDQSDMVPHDFVISDVSAQRSRPASPRPESAEAPYNANLRQR 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12866209 12877829 - MC01g0662 Mch1g0971 675863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0971 789 PANTHER TRANSCRIPTION FACTOR E2F 400 740 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Mch1g0971 789 Pfam E2F/DP family winged-helix DNA-binding domain 462 525 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 Pfam E2F transcription factor CC-MB domain 541 641 IPR032198 GO:0046983(InterPro)
Mch1g0971 789 CDD E2F_DD 541 642 IPR032198 GO:0046983(InterPro)
Mch1g0971 789 Gene3D - 454 527 IPR036388 -
Mch1g0971 789 SUPERFAMILY E2F-DP heterodimerization region 539 642 IPR037241 -
Mch1g0971 789 SMART mt_12 235 266 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 334 365 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 199 230 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 267 296 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 301 333 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 164 194 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 MobiDBLite consensus disorder prediction 413 452 - -
Mch1g0971 789 Gene3D - 532 642 - -
Mch1g0971 789 SUPERFAMILY Winged helix DNA-binding domain 460 523 IPR036390 -
Mch1g0971 789 Gene3D Transcription termination factor 3, mitochondrial 214 390 IPR038538 -
Mch1g0971 789 MobiDBLite consensus disorder prediction 431 452 - -
Mch1g0971 789 SMART E2F_TDP_2 460 525 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 MobiDBLite consensus disorder prediction 762 789 - -
Mch1g0971 789 MobiDBLite consensus disorder prediction 681 702 - -
Mch1g0971 789 Coils Coil 545 572 - -
Mch1g0971 789 FunFam E2F transcription factor 1 454 527 - -
Mch1g0971 789 FunFam Transcription termination factor MTEF1, chloroplastic 223 387 - -
Mch1g0971 789 Pfam mTERF 224 379 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0971 K06620 - - csv:101212480 1176.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0971 Mch-Chr1:12866209 Mch3g1476 Mch-Chr3:16986464 1.13E-09 dispersed
Mch3g0966 Mch-Chr3:13514394 Mch1g0971 Mch-Chr1:12866209 3.00E-33 transposed
Mch4g0636 Mch-Chr4:4183757 Mch1g0971 Mch-Chr1:12866209 7.85E-27 transposed
Mch5g1229 Mch-Chr5:12141130 Mch1g0971 Mch-Chr1:12866209 5.04E-11 transposed
Mch8g0842 Mch-Chr8:6009724 Mch1g0971 Mch-Chr1:12866209 3.51E-64 transposed
Mch1g0971 Mch-Chr1:12866209 Mch2g0227 Mch-Chr2:1725575 3.58E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42704 PF02536 mTERF 1.60E-33 No_clan Mch TR