Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g0971 | ATGATGTATGGGCCTGGGCCTGGGCCGTGGTTGCGTAGTTTTCTTCTCAATTTGTCCGTGATGTCTGGCAGTGGCACCATTTTTGGATATTTGAAGATAGATAGAACTTATCCTCTGAAATTCTGTTCCTCACCACTTCTCAGATTCCCTCTCCTTCCCCAATGCAAGTTCGCTTTCAGAAAATGTAGTTCCTCCAAAACCATGCAATTGCTACTGCAAGACGGAGCTCTCCAATTTCTCTCCAATGGCAGATTCAAATTCATCCACTCTTCTCCTTCCCCATTTTTCCCCTCAATTTCCCGCTCCTCCACTACCCTCCAACAATTCCCCTTCCTCTCCAATGCCACAATCTCTTTCGTTTTCCCCTCTAAACTGCCACCTCGGAGCCCCGCCGTTCCTCCCCTCTCGCCGCCGCCACTGCCCCACCCCGACCCTCGCACCGAGTTCCAGGAGAAAATGCTCTTCCTCGACTCCATCGGCATCGACTTCTTCTCCGTCATCAAAGACCATCCTCCCGTCGCCGCCGCCTCCCTCGCTGACATCAGATCCGCTGTCGATTTCATGACCTCCATGAACTTTACCGCCGTCGAGTTCCGGAGAATCGTCGGTATGTGCCCCGAGATCCTCACCTCTCGCGCCGCCGATCTCGTCCCGGTCTTCACCTTCCTCCTCCGCGAGGCTCGAGTCGCCGGCTCCGACATCAAGCGCGTCGTAAATCGCCGCCCTAGGTTACTCGCGTGCAGCGTCAAGGATCGGCTCCGTCCAACTCTCTACTTCCTACAAAGCATCGGCATATCGGAGGTACACAAACACACCTCATTACTCTCCTGTAGCGTCGAGGAGAAGCTGATTCCGAGAATCGAATTCTTCGAGAACCTAGGGTTTTCCCGCCGGGACGCCGTGATAATGTTCCGGCGATTCCCGCAGCTGTTCTGCTACAGCATCAAGGAGAATCTGGAGCCGAAACTGAATTACTTCGTGGTGGAAATGGGGAGGGAACTGAAGGAATTGAAGGAGTTTCCGCATTACTTTTCGTTTAGCTTAGAGCATAGGATTAAGCCGAGACATCAAAGCTGTGTGGAGAAGGGAGTATGTTTCCCATTGCCGGATTTGTTGAAAACCAGTGAGATGAAATTCCGGGAAAAATTGGAGAAACTAAAGCAGAAGGGTGCTATGTATCACAATATGGTTGAATCTAATGACTGCATTCATGATCAAGGATCTTCCAAAGATGCTCTAAGTTCTATACAGACACCCGTGTCTGCAAAAGGAGGAAGGGTGTACAAGTCAAAGGCTTCAAGGAGAACTACATCTGGGCCTCAAACACCAATCTCAGACACTAGCTCTTTTTCATCTCTTACTCCAGCTGGAAGCTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAACGCTGCAGAAACTTTGAAGGTGCAGAAGAGGAGGATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAATATAATATACTGGAAGGGATTCAATGCACAAATTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGACGACAAGATAAGAGGATTGCAGGAAAGATTGAGGAATCTGAGTGAAGATGAAAATGTCCAAAAATGGCTCTACGTGACCGAAGAAGACATTAAAAACTTGCCTTGCTTCCAGAATGAAACCCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATCCACAGAGAAGATATAGAATAGTTCTTAGGAGTACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTCGAGGAGAAGTTTGAGGAGATGAATGTGGTCCCACCACCTAGTAGCTTCCTACATGCTTCAAGTTCAGGATCTAACGAACATCTAGCTACAGAAGTAATCATTGGGGAGAATAGTAGAAAGGAAACAGAACCTCCGGCACATCTGTCCCAGCACAGCAGCAGCTGTGATGTGAACGGTTCAAACGAGTTTCCTGGTGGAATCATGAAGATAATTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCAGACGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCCACAGCAGATATTGCATGGGATCAGTCAGATATGGTTCCTCATGACTTTGTAATATCTGATGTTAGTGCCCAAAGGTCAAGACCAGCAAGCCCACGTCCAGAGTCGGCCGAAGCGCCATACAATGCTAACTTAAGACAGAGGTGA | 2370 | 46.79 | MMYGPGPGPWLRSFLLNLSVMSGSGTIFGYLKIDRTYPLKFCSSPLLRFPLLPQCKFAFRKCSSSKTMQLLLQDGALQFLSNGRFKFIHSSPSPFFPSISRSSTTLQQFPFLSNATISFVFPSKLPPRSPAVPPLSPPPLPHPDPRTEFQEKMLFLDSIGIDFFSVIKDHPPVAAASLADIRSAVDFMTSMNFTAVEFRRIVGMCPEILTSRAADLVPVFTFLLREARVAGSDIKRVVNRRPRLLACSVKDRLRPTLYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDAVIMFRRFPQLFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLEHRIKPRHQSCVEKGVCFPLPDLLKTSEMKFREKLEKLKQKGAMYHNMVESNDCIHDQGSSKDALSSIQTPVSAKGGRVYKSKASRRTTSGPQTPISDTSSFSSLTPAGSCRYDSSLGLLTKKFINLIKQARDGILDLNNAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNAQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRGLQERLRNLSEDENVQKWLYVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEVIIGENSRKETEPPAHLSQHSSSCDVNGSNEFPGGIMKIIPSEVDNDADYWLLSDAEVSITDMWRTDSTADIAWDQSDMVPHDFVISDVSAQRSRPASPRPESAEAPYNANLRQR | 789 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12866209 | 12877829 | - | MC01g0662 | Mch1g0971 | 675863 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g0971 | 789 | PANTHER | TRANSCRIPTION FACTOR E2F | 400 | 740 | IPR015633 | GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER) | |
Mch1g0971 | 789 | Pfam | E2F/DP family winged-helix DNA-binding domain | 462 | 525 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Mch1g0971 | 789 | Pfam | E2F transcription factor CC-MB domain | 541 | 641 | IPR032198 | GO:0046983(InterPro) | |
Mch1g0971 | 789 | CDD | E2F_DD | 541 | 642 | IPR032198 | GO:0046983(InterPro) | |
Mch1g0971 | 789 | Gene3D | - | 454 | 527 | IPR036388 | - | |
Mch1g0971 | 789 | SUPERFAMILY | E2F-DP heterodimerization region | 539 | 642 | IPR037241 | - | |
Mch1g0971 | 789 | SMART | mt_12 | 235 | 266 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Mch1g0971 | 789 | SMART | mt_12 | 334 | 365 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Mch1g0971 | 789 | SMART | mt_12 | 199 | 230 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Mch1g0971 | 789 | SMART | mt_12 | 267 | 296 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Mch1g0971 | 789 | SMART | mt_12 | 301 | 333 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Mch1g0971 | 789 | SMART | mt_12 | 164 | 194 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
Mch1g0971 | 789 | MobiDBLite | consensus disorder prediction | 413 | 452 | - | - | |
Mch1g0971 | 789 | Gene3D | - | 532 | 642 | - | - | |
Mch1g0971 | 789 | SUPERFAMILY | Winged helix DNA-binding domain | 460 | 523 | IPR036390 | - | |
Mch1g0971 | 789 | Gene3D | Transcription termination factor 3, mitochondrial | 214 | 390 | IPR038538 | - | |
Mch1g0971 | 789 | MobiDBLite | consensus disorder prediction | 431 | 452 | - | - | |
Mch1g0971 | 789 | SMART | E2F_TDP_2 | 460 | 525 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Mch1g0971 | 789 | MobiDBLite | consensus disorder prediction | 762 | 789 | - | - | |
Mch1g0971 | 789 | MobiDBLite | consensus disorder prediction | 681 | 702 | - | - | |
Mch1g0971 | 789 | Coils | Coil | 545 | 572 | - | - | |
Mch1g0971 | 789 | FunFam | E2F transcription factor 1 | 454 | 527 | - | - | |
Mch1g0971 | 789 | FunFam | Transcription termination factor MTEF1, chloroplastic | 223 | 387 | - | - | |
Mch1g0971 | 789 | Pfam | mTERF | 224 | 379 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g0971 | Mch-Chr1:12866209 | Mch3g1476 | Mch-Chr3:16986464 | 1.13E-09 | dispersed | |
Mch3g0966 | Mch-Chr3:13514394 | Mch1g0971 | Mch-Chr1:12866209 | 3.00E-33 | transposed | |
Mch4g0636 | Mch-Chr4:4183757 | Mch1g0971 | Mch-Chr1:12866209 | 7.85E-27 | transposed | |
Mch5g1229 | Mch-Chr5:12141130 | Mch1g0971 | Mch-Chr1:12866209 | 5.04E-11 | transposed | |
Mch8g0842 | Mch-Chr8:6009724 | Mch1g0971 | Mch-Chr1:12866209 | 3.51E-64 | transposed | |
Mch1g0971 | Mch-Chr1:12866209 | Mch2g0227 | Mch-Chr2:1725575 | 3.58E-145 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42704 | PF02536 | mTERF | 1.60E-33 | No_clan | Mch | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch1g0971 | K06620 | - | csv:101212480 | 1176.77 |