Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0971 ATGATGTATGGGCCTGGGCCTGGGCCGTGGTTGCGTAGTTTTCTTCTCAATTTGTCCGTGATGTCTGGCAGTGGCACCATTTTTGGATATTTGAAGATAGATAGAACTTATCCTCTGAAATTCTGTTCCTCACCACTTCTCAGATTCCCTCTCCTTCCCCAATGCAAGTTCGCTTTCAGAAAATGTAGTTCCTCCAAAACCATGCAATTGCTACTGCAAGACGGAGCTCTCCAATTTCTCTCCAATGGCAGATTCAAATTCATCCACTCTTCTCCTTCCCCATTTTTCCCCTCAATTTCCCGCTCCTCCACTACCCTCCAACAATTCCCCTTCCTCTCCAATGCCACAATCTCTTTCGTTTTCCCCTCTAAACTGCCACCTCGGAGCCCCGCCGTTCCTCCCCTCTCGCCGCCGCCACTGCCCCACCCCGACCCTCGCACCGAGTTCCAGGAGAAAATGCTCTTCCTCGACTCCATCGGCATCGACTTCTTCTCCGTCATCAAAGACCATCCTCCCGTCGCCGCCGCCTCCCTCGCTGACATCAGATCCGCTGTCGATTTCATGACCTCCATGAACTTTACCGCCGTCGAGTTCCGGAGAATCGTCGGTATGTGCCCCGAGATCCTCACCTCTCGCGCCGCCGATCTCGTCCCGGTCTTCACCTTCCTCCTCCGCGAGGCTCGAGTCGCCGGCTCCGACATCAAGCGCGTCGTAAATCGCCGCCCTAGGTTACTCGCGTGCAGCGTCAAGGATCGGCTCCGTCCAACTCTCTACTTCCTACAAAGCATCGGCATATCGGAGGTACACAAACACACCTCATTACTCTCCTGTAGCGTCGAGGAGAAGCTGATTCCGAGAATCGAATTCTTCGAGAACCTAGGGTTTTCCCGCCGGGACGCCGTGATAATGTTCCGGCGATTCCCGCAGCTGTTCTGCTACAGCATCAAGGAGAATCTGGAGCCGAAACTGAATTACTTCGTGGTGGAAATGGGGAGGGAACTGAAGGAATTGAAGGAGTTTCCGCATTACTTTTCGTTTAGCTTAGAGCATAGGATTAAGCCGAGACATCAAAGCTGTGTGGAGAAGGGAGTATGTTTCCCATTGCCGGATTTGTTGAAAACCAGTGAGATGAAATTCCGGGAAAAATTGGAGAAACTAAAGCAGAAGGGTGCTATGTATCACAATATGGTTGAATCTAATGACTGCATTCATGATCAAGGATCTTCCAAAGATGCTCTAAGTTCTATACAGACACCCGTGTCTGCAAAAGGAGGAAGGGTGTACAAGTCAAAGGCTTCAAGGAGAACTACATCTGGGCCTCAAACACCAATCTCAGACACTAGCTCTTTTTCATCTCTTACTCCAGCTGGAAGCTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAACGCTGCAGAAACTTTGAAGGTGCAGAAGAGGAGGATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAATATAATATACTGGAAGGGATTCAATGCACAAATTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGACGACAAGATAAGAGGATTGCAGGAAAGATTGAGGAATCTGAGTGAAGATGAAAATGTCCAAAAATGGCTCTACGTGACCGAAGAAGACATTAAAAACTTGCCTTGCTTCCAGAATGAAACCCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATTATCCACAGAGAAGATATAGAATAGTTCTTAGGAGTACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTCGAGGAGAAGTTTGAGGAGATGAATGTGGTCCCACCACCTAGTAGCTTCCTACATGCTTCAAGTTCAGGATCTAACGAACATCTAGCTACAGAAGTAATCATTGGGGAGAATAGTAGAAAGGAAACAGAACCTCCGGCACATCTGTCCCAGCACAGCAGCAGCTGTGATGTGAACGGTTCAAACGAGTTTCCTGGTGGAATCATGAAGATAATTCCTTCAGAAGTTGATAATGATGCAGATTACTGGCTGTTATCAGACGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCCACAGCAGATATTGCATGGGATCAGTCAGATATGGTTCCTCATGACTTTGTAATATCTGATGTTAGTGCCCAAAGGTCAAGACCAGCAAGCCCACGTCCAGAGTCGGCCGAAGCGCCATACAATGCTAACTTAAGACAGAGGTGA 2370 46.79 MMYGPGPGPWLRSFLLNLSVMSGSGTIFGYLKIDRTYPLKFCSSPLLRFPLLPQCKFAFRKCSSSKTMQLLLQDGALQFLSNGRFKFIHSSPSPFFPSISRSSTTLQQFPFLSNATISFVFPSKLPPRSPAVPPLSPPPLPHPDPRTEFQEKMLFLDSIGIDFFSVIKDHPPVAAASLADIRSAVDFMTSMNFTAVEFRRIVGMCPEILTSRAADLVPVFTFLLREARVAGSDIKRVVNRRPRLLACSVKDRLRPTLYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDAVIMFRRFPQLFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLEHRIKPRHQSCVEKGVCFPLPDLLKTSEMKFREKLEKLKQKGAMYHNMVESNDCIHDQGSSKDALSSIQTPVSAKGGRVYKSKASRRTTSGPQTPISDTSSFSSLTPAGSCRYDSSLGLLTKKFINLIKQARDGILDLNNAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNAQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRGLQERLRNLSEDENVQKWLYVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEVIIGENSRKETEPPAHLSQHSSSCDVNGSNEFPGGIMKIIPSEVDNDADYWLLSDAEVSITDMWRTDSTADIAWDQSDMVPHDFVISDVSAQRSRPASPRPESAEAPYNANLRQR 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12866209 12877829 - MC01g0662 Mch1g0971 675863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0971 789 PANTHER TRANSCRIPTION FACTOR E2F 400 740 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Mch1g0971 789 Pfam E2F/DP family winged-helix DNA-binding domain 462 525 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 Pfam E2F transcription factor CC-MB domain 541 641 IPR032198 GO:0046983(InterPro)
Mch1g0971 789 CDD E2F_DD 541 642 IPR032198 GO:0046983(InterPro)
Mch1g0971 789 Gene3D - 454 527 IPR036388 -
Mch1g0971 789 SUPERFAMILY E2F-DP heterodimerization region 539 642 IPR037241 -
Mch1g0971 789 SMART mt_12 235 266 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 334 365 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 199 230 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 267 296 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 301 333 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 SMART mt_12 164 194 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 MobiDBLite consensus disorder prediction 413 452 - -
Mch1g0971 789 Gene3D - 532 642 - -
Mch1g0971 789 SUPERFAMILY Winged helix DNA-binding domain 460 523 IPR036390 -
Mch1g0971 789 Gene3D Transcription termination factor 3, mitochondrial 214 390 IPR038538 -
Mch1g0971 789 MobiDBLite consensus disorder prediction 431 452 - -
Mch1g0971 789 SMART E2F_TDP_2 460 525 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch1g0971 789 MobiDBLite consensus disorder prediction 762 789 - -
Mch1g0971 789 MobiDBLite consensus disorder prediction 681 702 - -
Mch1g0971 789 Coils Coil 545 572 - -
Mch1g0971 789 FunFam E2F transcription factor 1 454 527 - -
Mch1g0971 789 FunFam Transcription termination factor MTEF1, chloroplastic 223 387 - -
Mch1g0971 789 Pfam mTERF 224 379 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0971 Mch-Chr1:12866209 Mch3g1476 Mch-Chr3:16986464 1.13E-09 dispersed
Mch3g0966 Mch-Chr3:13514394 Mch1g0971 Mch-Chr1:12866209 3.00E-33 transposed
Mch4g0636 Mch-Chr4:4183757 Mch1g0971 Mch-Chr1:12866209 7.85E-27 transposed
Mch5g1229 Mch-Chr5:12141130 Mch1g0971 Mch-Chr1:12866209 5.04E-11 transposed
Mch8g0842 Mch-Chr8:6009724 Mch1g0971 Mch-Chr1:12866209 3.51E-64 transposed
Mch1g0971 Mch-Chr1:12866209 Mch2g0227 Mch-Chr2:1725575 3.58E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42704 PF02536 mTERF 1.60E-33 No_clan Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0971 K06620 - csv:101212480 1176.77