Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0981 ATGAACGATCTGTTTTCCTCCGATTCGTTCCGGCGGGAGCAGCGCCATTACTCCGTCGAGATGGCTCCCGACGCGCCGTCGTCCACGACGGTCAATCTCAACAGCTTCTTCGAAGACGTCGAGTCCGTGAAGGCGGAACTGACGGAGCTCGAACGCCTCCACCACAGCCTCCACAACTCTCACGAACAGAGCAAGACTCTGCACAACTCGAAGGCGATTAAGGATCTCCGATCTCGAATGGAATCGGACGTCGCCGTTGCTCTGAAGAAGGCCAGGGCAATCAAGCTCCGATTGGAGGATCTGGACCGGTCCAACGCCGATAACCGGAATCTTCCCGGTTGCGGCCCTGGCTCCTCCGCGGACCGGTCCCGAACCTCCGTGGTGAACGGATTGAGGAAGAATCTGTGCGATTCGATGGAGAGTTTCAACAAATTGAGAGAGGAGATTTCGTCGTCGTATAAGGAGACGATAGAACGCCGATATTTCACCATCACTGGAGAGAATCCGGACGAGAAAACTATCGACCTTTTGATCTCTACAGGTGAAAGCGAGACGTTCCTGCAAAAGGCGATTCAGAAGCAAGGGAGAGGCAGAGTCATGGAAACGATTCAAGAGATTCAAGAGAGGCACGACGCAGTGAAGGACTTGGAGAAGAATCTGAAAGAGCTGCACCAAGTGTTCATGGACATGGCGGTGCTGGTTCAAGCCCAGGGGCACCAATTGGACGACATAGAGAGCCAAGTGACTCGAGCCAACTCGGTGATCAGGCACGGCACGGCGCAGCTGCACAAGGCAAGATTCTACCAGAAGAATACACGAAAGTGGACGTTTATTGGCATCGCCATTTTGGTAGTCATCCTCTTGATCATCATCCTTTCCGTAACCCTGCGCAAGTAG 897 53.62 MNDLFSSDSFRREQRHYSVEMAPDAPSSTTVNLNSFFEDVESVKAELTELERLHHSLHNSHEQSKTLHNSKAIKDLRSRMESDVAVALKKARAIKLRLEDLDRSNADNRNLPGCGPGSSADRSRTSVVNGLRKNLCDSMESFNKLREEISSSYKETIERRYFTITGENPDEKTIDLLISTGESETFLQKAIQKQGRGRVMETIQEIQERHDAVKDLEKNLKELHQVFMDMAVLVQAQGHQLDDIESQVTRANSVIRHGTAQLHKARFYQKNTRKWTFIGIAILVVILLIIILSVTLRK 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12931189 12932701 + MC01g0672 Mch1g0981 675873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0981 298 CDD SNARE_syntaxin1-like 202 264 - -
Mch1g0981 298 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
Mch1g0981 298 Gene3D - 193 296 - -
Mch1g0981 298 SMART tSNARE_6 198 265 IPR000727 -
Mch1g0981 298 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Mch1g0981 298 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
Mch1g0981 298 Coils Coil 203 226 - -
Mch1g0981 298 FunFam Syntaxin 132 196 296 - -
Mch1g0981 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Mch1g0981 298 MobiDBLite consensus disorder prediction 105 126 - -
Mch1g0981 298 Pfam SNARE domain 240 291 IPR000727 -
Mch1g0981 298 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch1g0981 298 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch1g0981 298 PANTHER SYNTAXIN 35 286 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch1g0981 298 Coils Coil 33 53 - -
Mch1g0981 298 Gene3D - 31 163 - -
Mch1g0981 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0981 Mch-Chr1:12931189 Mch3g1169 Mch-Chr3:14936948 1.34E-106 dispersed
Mch1g0981 Mch-Chr1:12931189 Mch5g1533 Mch-Chr5:16307349 1.83E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0981 K08486 - csv:101213443 455.292