Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0982 ATGAACAACGGCACGGCCAACGGCGGCGGATTTCTGTCTTCGAGCAACATCGGCGGTTTCGGATACGGAATCGGCGTCTCCTTGGGGCTTTTGATTCTGATCACCACAATCCTCTTGGCTTCCTATTACTGCACCAGAACCACCCTACCGACTTCCTCCACGGTTCAATTGAACGTCAATCTCTCGTCGCCGCCGGCGCAGGCCGGGGAAGAAGTCGTCGTCGACATCGGACTTGATCAGGAAACCATTACGAGCTATCCGAAATTGCTGTATTCCGAGGCGAAGCTTCAGAAGAACGATTCCTCTGCTTCTTGCTGCTCGATCTGTTTGGCCGATTACAAGAACTCCGATGTTCTTCGGCTTCTGCCGGATTGCGGCCATCTCTTCCACCTCAAATGCGTCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACTTCGCCGATTCCGACGCCGCTCTCGACGCCTCTGGCGGAGCAAGTTCCTCTGGCCAGTCGCCGCGAT 513 56.53 MNNGTANGGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRTTLPTSSTVQLNVNLSSPPAQAGEEVVVDIGLDQETITSYPKLLYSEAKLQKNDSSASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12934982 12935494 + MC01g0673 Mch1g0982 675874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0982 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Mch1g0982 171 CDD RING-H2_EL5-like 105 148 - -
Mch1g0982 171 SMART ring_2 106 147 IPR001841 -
Mch1g0982 171 SUPERFAMILY RING/U-box 82 153 - -
Mch1g0982 171 FunFam E3 ubiquitin-protein ligase ATL6 67 153 - -
Mch1g0982 171 Pfam Ring finger domain 105 148 IPR001841 -
Mch1g0982 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 165 IPR045899 -
Mch1g0982 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0982 Mch-Chr1:12934982 Mch8g0168 Mch-Chr8:1082346 2.75E-30 dispersed
Mch5g0429 Mch-Chr5:2922826 Mch1g0982 Mch-Chr1:12934982 2.27E-37 transposed
Mch1g0982 Mch-Chr1:12934982 Mch5g1527 Mch-Chr5:16258227 1.88E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0982 - - - 0.0