Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0987 ATGAACGGCAACGCTCGGAAAGGTCGACCGCCGCCGCAGCACCTGTCACCGGCTCCACCGCCGAAGCACCAGGCACTATCTCAAGAGGATGATTTTGTCGACGAAGATGTCTTCCTCGACGAGACTCTCCTCGACGAGGACGCTCTGATCCTCCGCGACATTGACGAGCGTCTGGCCCTCGCTTCCCGTCTCTCCAAGTGGACTCGTCCACCTCTTTCCCAGGATTACCTGTCGCAGTCCAAGAGCATCGTGTTTCAGCAATTGGAGATTGATTATGTGATTGGAGATAGTCACAAAGAATTGTTGTCAAATTTGTCTGGCCCTGCCGCCATTCTCAGAATTTTTGGGGTTACGAGGGAAGGACACAGTGTATGCTGCCACGTTCATGGATTTGAACCATACTTCTATATCAGTTGCCCTCCAGGGATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTGGAGGTTAGAATGAGAGAGGTAAATAGGAATAGTAAAGCCCCGAATTTTGTGCGTCGCATTGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAAACTTCTCAATCCTTTCTTAAAATCGTAGTTGCACTACCAACAATGGTCGCCAGTTGCCGTGGTATTCTTGATAGAGGCATACAAGTTGATGGCTTTGGTACGAAGAGCTTCATGACATATGAAAGCAATGTTCTTTTTGCCCTTCGTTTTATGATTGATTGTAATGTTGTTGGTGGAAACTGGATTGAGATTCCTGTGGGAAAATATAAGAAAACCATTAGAAACTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTCTCCAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACACATGATCCTGTGATCCAGGTGGCAAACATAGTTACTTTGCAGGGAGAGGATCAACCATTTATTCGCAATGTTATGACCCTTAAGTCTTGCTCTACTATTCCAGGTGTTGAAGTCTTATCATTTGATACAGAACGTGAAGTTTTGCTGGCTTGGAGGGACCTAATTCGTGAAGTTGATCCTGATATAATAATTGGATATAATATCTGCAAATTTGATTTGCCATATTTAATTGAGAGAGCCGAGGCACTGAAAATTGCAGAATTTCCAATATTGGGTCGCATCAGGAATAGCAAAGTCCGTGTCAAAGATACAACTTTTTCTTCTAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTGTGCAACGAGATTATAAATTAAGTTCGTACTCATTGAATTCTGTTTCTTCACATTTTCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCAGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTACGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCTAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAGGCAAAACAGAAAAACCTTGTTATCCCAAATGCTAAGCAGGCTGGATCTGATCAAGGAACTTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAGAAGCCCATTGCTACGTTGGATTTTGCGTCTTTGTATCCTTCTATCATGATGGCATATAATTTATGTTATTGCACTTTGGTAACTCCAGAAGACATGCGCAAGCTAAACCTGCCTCCAGAACATTTCAATAAAACCCCATCTGGCGAGATATTTGTGAAGTCAAATTTACAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCTCGGAAAAGAGCAAAAGCAGATTTGAAGGAAGCAAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGTTGGCTTTGAAGATAAGTGCAAATTCTGTATATGGGTTTACAGGAGCTACTGTTGGTCAGTTACCGTGTCTAGAGATATCATCCAGTGTTACAAGCTACGGTCGACAAATGATTGAGTGCACAAAAAAGCTTGTGGAAGATAAATTTACAACACTTGGGGGCTATGAGCATAATGCTGAGGTAATCTACGGTGATACAGATTCCGTTATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGATTATATTAGTGGTACTTTCATTAAACCCATCAAGTTAGAATTTGAGAAGGTTTATTATCCATACCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCCAACAAGTTCGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAATCTTGTAAATGAGTGCTTGCACAAAATTCTTATTGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACAATTTCAGATCTTCTTATGAACCGTGTCGATTTATCACTCTTGGTTATCACAAAGGGACTGACGAAGACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCAGAACGCATGCGTAAGAGAGATGCTGCGACTGCACCAAATGTTGGCGATCGAGTACCTTACGTGATTATTAAAGCTGCAAAAGGTGCCAAGGCATATGAGAAGTCAGAGGATCCCATTTATGTTCTAGAGAATAACATACCAATAGACCCACAGTACTATCTCGAGAACCAGATTAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCATGAAAAATGCAAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATATTTATTTCTACTCCTTCAAACAGTGGCATAATGAAATTTGCTAAGAAACAGCTTACTTGCATTGGCTGCAAGGCTCTACTAAGCAAGGCAGACAAAACTCTGTGTGCACACTGCAAAGGAAGAGAAGCGGAACTTTACTGCAAAGCAGTAGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCCCTTCACCAAGATATCCTCTGTACGAGTCGAGACTGTCCAATCTTTTATCGAAGAAAAAAGGCACAAAAAGACATGGCTGAGGCTAGACGACATTTGGAACGTTGGAATTTTTAA 3258 41.9 MNGNARKGRPPPQHLSPAPPPKHQALSQEDDFVDEDVFLDETLLDEDALILRDIDERLALASRLSKWTRPPLSQDYLSQSKSIVFQQLEIDYVIGDSHKELLSNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEVRMREVNRNSKAPNFVRRIELVQKRSIMYYQQQTSQSFLKIVVALPTMVASCRGILDRGIQVDGFGTKSFMTYESNVLFALRFMIDCNVVGGNWIEIPVGKYKKTIRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANIVTLQGEDQPFIRNVMTLKSCSTIPGVEVLSFDTEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAVQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDMRKLNLPPEHFNKTPSGEIFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIECTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPIMKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSKADKTLCAHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDILCTSRDCPIFYRRKKAQKDMAEARRHLERWNF 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12960118 12978164 - MC01g0678 Mch1g0987 675879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0987 1085 CDD DNA_polB_delta_exo 289 517 - -
Mch1g0987 1085 FunFam DNA polymerase 332 566 - -
Mch1g0987 1085 Gene3D - 293 511 IPR036397 GO:0003676(InterPro)
Mch1g0987 1085 SUPERFAMILY DNA/RNA polymerases 550 962 IPR043502 -
Mch1g0987 1085 PRINTS DNA-directed DNA-polymerase family B signature 676 688 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch1g0987 1085 PRINTS DNA-directed DNA-polymerase family B signature 584 597 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch1g0987 1085 PRINTS DNA-directed DNA-polymerase family B signature 737 745 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch1g0987 1085 Pfam DNA polymerase family B, exonuclease domain 228 461 IPR006133 -
Mch1g0987 1085 SUPERFAMILY Ribonuclease H-like 109 531 IPR012337 -
Mch1g0987 1085 FunFam DNA polymerase 813 969 - -
Mch1g0987 1085 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 66 1061 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
Mch1g0987 1085 SMART polmehr3 292 751 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch1g0987 1085 Gene3D Palm domain of DNA polymerase 566 796 IPR023211 -
Mch1g0987 1085 Gene3D Helix hairpin bin 640 692 - -
Mch1g0987 1085 FunFam DNA polymerase 640 692 - -
Mch1g0987 1085 ProSitePatterns DNA polymerase family B signature. 739 747 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Mch1g0987 1085 MobiDBLite consensus disorder prediction 1 27 - -
Mch1g0987 1085 Gene3D DNA Polymerase, chain B, domain 1 88 264 - -
Mch1g0987 1085 Gene3D - 813 968 IPR042087 -
Mch1g0987 1085 Pfam C4-type zinc-finger of DNA polymerase delta 995 1066 IPR025687 -
Mch1g0987 1085 Pfam DNA polymerase family B 525 958 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Mch1g0987 1085 CDD POLBc_delta 566 959 - -
Mch1g0987 1085 FunFam DNA polymerase 89 264 - -
Mch1g0987 1085 NCBIfam DNA polymerase (pol2) 350 956 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0987 Mch-Chr1:12960118 Mch8g2841 Mch-Chr8:31241951 1.83E-85 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0987 K02327 - csv:101219332 2056.57