Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g0987 | ATGAACGGCAACGCTCGGAAAGGTCGACCGCCGCCGCAGCACCTGTCACCGGCTCCACCGCCGAAGCACCAGGCACTATCTCAAGAGGATGATTTTGTCGACGAAGATGTCTTCCTCGACGAGACTCTCCTCGACGAGGACGCTCTGATCCTCCGCGACATTGACGAGCGTCTGGCCCTCGCTTCCCGTCTCTCCAAGTGGACTCGTCCACCTCTTTCCCAGGATTACCTGTCGCAGTCCAAGAGCATCGTGTTTCAGCAATTGGAGATTGATTATGTGATTGGAGATAGTCACAAAGAATTGTTGTCAAATTTGTCTGGCCCTGCCGCCATTCTCAGAATTTTTGGGGTTACGAGGGAAGGACACAGTGTATGCTGCCACGTTCATGGATTTGAACCATACTTCTATATCAGTTGCCCTCCAGGGATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTGGAGGTTAGAATGAGAGAGGTAAATAGGAATAGTAAAGCCCCGAATTTTGTGCGTCGCATTGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAAACTTCTCAATCCTTTCTTAAAATCGTAGTTGCACTACCAACAATGGTCGCCAGTTGCCGTGGTATTCTTGATAGAGGCATACAAGTTGATGGCTTTGGTACGAAGAGCTTCATGACATATGAAAGCAATGTTCTTTTTGCCCTTCGTTTTATGATTGATTGTAATGTTGTTGGTGGAAACTGGATTGAGATTCCTGTGGGAAAATATAAGAAAACCATTAGAAACTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTCTCCAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACACATGATCCTGTGATCCAGGTGGCAAACATAGTTACTTTGCAGGGAGAGGATCAACCATTTATTCGCAATGTTATGACCCTTAAGTCTTGCTCTACTATTCCAGGTGTTGAAGTCTTATCATTTGATACAGAACGTGAAGTTTTGCTGGCTTGGAGGGACCTAATTCGTGAAGTTGATCCTGATATAATAATTGGATATAATATCTGCAAATTTGATTTGCCATATTTAATTGAGAGAGCCGAGGCACTGAAAATTGCAGAATTTCCAATATTGGGTCGCATCAGGAATAGCAAAGTCCGTGTCAAAGATACAACTTTTTCTTCTAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTGTGCAACGAGATTATAAATTAAGTTCGTACTCATTGAATTCTGTTTCTTCACATTTTCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCAGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTACGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCTAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAGGCAAAACAGAAAAACCTTGTTATCCCAAATGCTAAGCAGGCTGGATCTGATCAAGGAACTTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAGAAGCCCATTGCTACGTTGGATTTTGCGTCTTTGTATCCTTCTATCATGATGGCATATAATTTATGTTATTGCACTTTGGTAACTCCAGAAGACATGCGCAAGCTAAACCTGCCTCCAGAACATTTCAATAAAACCCCATCTGGCGAGATATTTGTGAAGTCAAATTTACAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCTCGGAAAAGAGCAAAAGCAGATTTGAAGGAAGCAAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGTTGGCTTTGAAGATAAGTGCAAATTCTGTATATGGGTTTACAGGAGCTACTGTTGGTCAGTTACCGTGTCTAGAGATATCATCCAGTGTTACAAGCTACGGTCGACAAATGATTGAGTGCACAAAAAAGCTTGTGGAAGATAAATTTACAACACTTGGGGGCTATGAGCATAATGCTGAGGTAATCTACGGTGATACAGATTCCGTTATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGATTATATTAGTGGTACTTTCATTAAACCCATCAAGTTAGAATTTGAGAAGGTTTATTATCCATACCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCCAACAAGTTCGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAATCTTGTAAATGAGTGCTTGCACAAAATTCTTATTGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACAATTTCAGATCTTCTTATGAACCGTGTCGATTTATCACTCTTGGTTATCACAAAGGGACTGACGAAGACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCAGAACGCATGCGTAAGAGAGATGCTGCGACTGCACCAAATGTTGGCGATCGAGTACCTTACGTGATTATTAAAGCTGCAAAAGGTGCCAAGGCATATGAGAAGTCAGAGGATCCCATTTATGTTCTAGAGAATAACATACCAATAGACCCACAGTACTATCTCGAGAACCAGATTAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCATGAAAAATGCAAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATATTTATTTCTACTCCTTCAAACAGTGGCATAATGAAATTTGCTAAGAAACAGCTTACTTGCATTGGCTGCAAGGCTCTACTAAGCAAGGCAGACAAAACTCTGTGTGCACACTGCAAAGGAAGAGAAGCGGAACTTTACTGCAAAGCAGTAGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCCCTTCACCAAGATATCCTCTGTACGAGTCGAGACTGTCCAATCTTTTATCGAAGAAAAAAGGCACAAAAAGACATGGCTGAGGCTAGACGACATTTGGAACGTTGGAATTTTTAA | 3258 | 41.9 | MNGNARKGRPPPQHLSPAPPPKHQALSQEDDFVDEDVFLDETLLDEDALILRDIDERLALASRLSKWTRPPLSQDYLSQSKSIVFQQLEIDYVIGDSHKELLSNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEVRMREVNRNSKAPNFVRRIELVQKRSIMYYQQQTSQSFLKIVVALPTMVASCRGILDRGIQVDGFGTKSFMTYESNVLFALRFMIDCNVVGGNWIEIPVGKYKKTIRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANIVTLQGEDQPFIRNVMTLKSCSTIPGVEVLSFDTEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAVQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDMRKLNLPPEHFNKTPSGEIFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIECTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPIMKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSKADKTLCAHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDILCTSRDCPIFYRRKKAQKDMAEARRHLERWNF | 1085 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12960118 | 12978164 | - | MC01g0678 | Mch1g0987 | 675879 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g0987 | 1085 | CDD | DNA_polB_delta_exo | 289 | 517 | - | - | |
Mch1g0987 | 1085 | FunFam | DNA polymerase | 332 | 566 | - | - | |
Mch1g0987 | 1085 | Gene3D | - | 293 | 511 | IPR036397 | GO:0003676(InterPro) | |
Mch1g0987 | 1085 | SUPERFAMILY | DNA/RNA polymerases | 550 | 962 | IPR043502 | - | |
Mch1g0987 | 1085 | PRINTS | DNA-directed DNA-polymerase family B signature | 676 | 688 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Mch1g0987 | 1085 | PRINTS | DNA-directed DNA-polymerase family B signature | 584 | 597 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Mch1g0987 | 1085 | PRINTS | DNA-directed DNA-polymerase family B signature | 737 | 745 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Mch1g0987 | 1085 | Pfam | DNA polymerase family B, exonuclease domain | 228 | 461 | IPR006133 | - | |
Mch1g0987 | 1085 | SUPERFAMILY | Ribonuclease H-like | 109 | 531 | IPR012337 | - | |
Mch1g0987 | 1085 | FunFam | DNA polymerase | 813 | 969 | - | - | |
Mch1g0987 | 1085 | PANTHER | DNA POLYMERASE CATALYTIC SUBUNIT | 66 | 1061 | IPR050240 | GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER) | |
Mch1g0987 | 1085 | SMART | polmehr3 | 292 | 751 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Mch1g0987 | 1085 | Gene3D | Palm domain of DNA polymerase | 566 | 796 | IPR023211 | - | |
Mch1g0987 | 1085 | Gene3D | Helix hairpin bin | 640 | 692 | - | - | |
Mch1g0987 | 1085 | FunFam | DNA polymerase | 640 | 692 | - | - | |
Mch1g0987 | 1085 | ProSitePatterns | DNA polymerase family B signature. | 739 | 747 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) | |
Mch1g0987 | 1085 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Mch1g0987 | 1085 | Gene3D | DNA Polymerase, chain B, domain 1 | 88 | 264 | - | - | |
Mch1g0987 | 1085 | Gene3D | - | 813 | 968 | IPR042087 | - | |
Mch1g0987 | 1085 | Pfam | C4-type zinc-finger of DNA polymerase delta | 995 | 1066 | IPR025687 | - | |
Mch1g0987 | 1085 | Pfam | DNA polymerase family B | 525 | 958 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
Mch1g0987 | 1085 | CDD | POLBc_delta | 566 | 959 | - | - | |
Mch1g0987 | 1085 | FunFam | DNA polymerase | 89 | 264 | - | - | |
Mch1g0987 | 1085 | NCBIfam | DNA polymerase (pol2) | 350 | 956 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g0987 | Mch-Chr1:12960118 | Mch8g2841 | Mch-Chr8:31241951 | 1.83E-85 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch1g0987 | K02327 | - | csv:101219332 | 2056.57 |