Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1011 ATGCCTGCTTGGTGGGTAAGAAAATTCAGTAAAAACAAGGAGCAGCATAATCATCACCATCATCATCCCACTTCTTTTCTCAACTTCTCCAAGTCTTCCTCCCCCAAAACCGAGCCTAAGACGGTCAGCGACAGGCCCAGGAGCTTCGATGAGGTCGCTGCTGTGATTTTCTCCCGCAATTCCCCGAGGTCTAGCAGGGATCTGGGCTCTTCCGGCGGCGGCGCCTCCTCTGGGTTTTCTGGGTTTGACTCCAATAGTGGGGATGAGAGTCATCCTCTTCCTCGACCCAATACCTCCGTCCTTGGGATTGATCATGGAGTCGGAACTGGATCGGGGTCGGCTTCCGTTTCCAGTGTTAGCTCTTCTGGGTCTTCTGATGACCATCCATCTGCTCACGAACAGCTTCAATTTGGAGGTTCCAGAGGATTTGGCGATACCAGAATAGAGACAAGGCCGAGAAGTCCAGGGCCAGGATCAAGAGGACCCACCAGTCCTACATCACCTCTCAACCCACGGCTCAGCGGCATGAGTCTGGAGTCTCCTACGGGCAAACTAGATGATGGGAAGAGTCGATGTCATAAGCTTCCGCTTCCTCCAAGTAGTAATCCAACCAGCCCTTCTTCCTTGACCAGCACACGAGCCATGAATTTGGGTGACACCAATACGACTACACAATCAAAGTGGCAGAAAGGAAGGCTTTTAGGGAGGGGAACATTTGGGCACGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTTAGGCTTATAAGTGATGACTCAACATCAAAAGAATGTCTCAAGCAATTAAACCAGGAGATAACCTTGCTCAGTCAGTTGTCGCATCCAAACATCGTCCAGTACTACGGTAGTGAAATGGGAGACGAGTCGCTCTCAGTCTATTTAGAATACGTTTCGGGTGGTTCAATCCACAAGTTACTACAAGAATATGGTGCCTTCAAAGAACCTGTTATAAGAAACTATACGCGAAAGATTCTTTCTGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCATAGGGACATTAAAGGGGCAAATATCTTAGTCGATCCGAATGGCGGGGTCAAGTTGGTGGACTTTGGCATGGCTAAACATATATCGAATTGTACTTCAATGCTATCTTTCAAAGGTAGTCCTTATTGGATGGCCCCTGAGGTTGTGATGAATACGAATGGCTACAGTCTCGCTGTAGACATCTGGAGCTTAGGGTGTACGGTTCTAGAAATGGCAACGTCTAAACCGCCATGGAGCAAGTACGAAGGGGTAGCTGCCATATTCAAAATTGGGAATAGCAAAGATATTCCTGAAATTCCGGACCATCTTTCCTATGATGCTAAAAATTTCGTGCAACTATGCTTGCAACGGGATCCATCTGCACGTCCTACTGCTGCAGAGCTACTGGATCACCCTTTTGTTCAAGATGCAGTAACACCAAGAATATCCGATGTCAACTTTACCTTGGATGCATTTCCCTTTAGCTTCGATGGATGCCAGACCCCGCCGTTGTTAGATCAGCATCCAAACAGAAAAAGTATAAGCATATGTGATGGAGATTATGTGACAAACCCGATGATCTCTTCGAGAGCTCTGAGGAGTCCTAGAGGAAATGTAAGATTGATCACCTCATTGCCCGTGTCACCATGTTCGAGTCCATTACGATCGTATGGCCCCGCACACCAGAGCTGTTATCTTTCACCACCCCACACTTCTTACACTGGGCTGGGTCAAAGTGGTTACAATTTGAACGAATACACATACAACACGAGACCAAGCACAATGTACACGCTCGATCCGTTACGGGAATCATCACTATTGAAAGTGCAGACCCATAGTGGATCACCAAGAACAAGAACAAGACCTCTATGA 1902 47.27 MPAWWVRKFSKNKEQHNHHHHHPTSFLNFSKSSSPKTEPKTVSDRPRSFDEVAAVIFSRNSPRSSRDLGSSGGGASSGFSGFDSNSGDESHPLPRPNTSVLGIDHGVGTGSGSASVSSVSSSGSSDDHPSAHEQLQFGGSRGFGDTRIETRPRSPGPGSRGPTSPTSPLNPRLSGMSLESPTGKLDDGKSRCHKLPLPPSSNPTSPSSLTSTRAMNLGDTNTTTQSKWQKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRLISDDSTSKECLKQLNQEITLLSQLSHPNIVQYYGSEMGDESLSVYLEYVSGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPNGGVKLVDFGMAKHISNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSKDIPEIPDHLSYDAKNFVQLCLQRDPSARPTAAELLDHPFVQDAVTPRISDVNFTLDAFPFSFDGCQTPPLLDQHPNRKSISICDGDYVTNPMISSRALRSPRGNVRLITSLPVSPCSSPLRSYGPAHQSCYLSPPHTSYTGLGQSGYNLNEYTYNTRPSTMYTLDPLRESSLLKVQTHSGSPRTRTRPL 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13125884 13131331 - MC01g0701 Mch1g1011 675903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1011 633 Pfam Protein kinase domain 229 484 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1011 633 MobiDBLite consensus disorder prediction 110 131 - -
Mch1g1011 633 ProSitePatterns Protein kinases ATP-binding region signature. 234 257 IPR017441 GO:0005524(InterPro)
Mch1g1011 633 Gene3D Transferase(Phosphotransferase) domain 1 224 500 - -
Mch1g1011 633 MobiDBLite consensus disorder prediction 204 227 - -
Mch1g1011 633 SUPERFAMILY Protein kinase-like (PK-like) 226 573 IPR011009 -
Mch1g1011 633 FunFam Mitogen-activated protein kinase kinase kinase 226 508 - -
Mch1g1011 633 MobiDBLite consensus disorder prediction 58 93 - -
Mch1g1011 633 SMART serkin_6 228 484 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1011 633 CDD STKc_MEKK1_plant 227 484 - -
Mch1g1011 633 ProSiteProfiles Protein kinase domain profile. 228 484 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1011 633 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 50 490 IPR050538 -
Mch1g1011 633 MobiDBLite consensus disorder prediction 9 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0143 Mch-Chr10:856718 Mch1g1011 Mch-Chr1:13125884 7.85E-139 dispersed
Mch1g1011 Mch-Chr1:13125884 Mch1g1196 Mch-Chr1:14334790 3.87E-102 dispersed
Mch1g1011 Mch-Chr1:13125884 Mch6g2443 Mch-Chr6:26371577 2.42E-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77118 PF00069 Pkinase 4.80E-72 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1011 K04421 - csv:101203907 932.554