Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g1019 | ATGGAACCCCCTCACCTCTCCAACTTCACTTCCCATCATCTGATCCAACTCTCCTCCATGGATGACCACCGCGTCCACGACCTCGACCTCGACTCCATTTGGCCCGCCTCGTTCTTGCCTCTTCAACCCCACGATCCCCGCCAGCAGCAACTCCCTTCTCCTTCTTCCTCCACCCACCTGCTGATAGAAAACACGGAGGCAGGTGATGATGAGGAAGAGCCCGAAGAAGAGCTCGGGGTCATGAAGGAGATGATGTACAAGATCGCGGCGATGCAACCGGTGGACATTGACCCTTCGACCATTCGGAAGCCGAAGCGGCGGAACGTTCGGATTAGCGATGACCCGCAGAGCATTGCCGCCCGTCTCCGGCGAGAGAGGATCAGCGAGAAGATCAGAGTTCTTCAGCGGCTTGTGCCCGGTGGTACTAAGATGGACACAGCTTCCATGTTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCCGGTTGCTGCAGGTCAGTCAGCCGCAACAGCCGGGCACCGGCGGTGGCGCCGCCGCCGGAGGGTGGCCGTTTACATTCGATAAGGCTAACGGTTCAACCTCCTCATCCACTTCCTTGGAAGCTCCTGCCATTACACCGTCGGGATGG | 639 | 57.43 | MEPPHLSNFTSHHLIQLSSMDDHRVHDLDLDSIWPASFLPLQPHDPRQQQLPSPSSSTHLLIENTEAGDDEEEPEEELGVMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRVLQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQVSQPQQPGTGGGAAAGGWPFTFDKANGSTSSSTSLEAPAITPSGW | 213 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13226753 | 13227739 | - | MC01g0709 | Mch1g1019 | 675911 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g1019 | 213 | FunFam | BHLH transcription factor | 114 | 177 | - | - | |
| Mch1g1019 | 213 | MobiDBLite | consensus disorder prediction | 191 | 213 | - | - | |
| Mch1g1019 | 213 | Pfam | Helix-loop-helix DNA-binding domain | 120 | 161 | IPR011598 | GO:0046983(InterPro) | |
| Mch1g1019 | 213 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 111 | 160 | IPR011598 | GO:0046983(InterPro) | |
| Mch1g1019 | 213 | SMART | finulus | 117 | 166 | IPR011598 | GO:0046983(InterPro) | |
| Mch1g1019 | 213 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 116 | 169 | IPR036638 | GO:0046983(InterPro) | |
| Mch1g1019 | 213 | CDD | bHLH_AtIND_like | 112 | 168 | - | - | |
| Mch1g1019 | 213 | Gene3D | - | 114 | 175 | IPR036638 | GO:0046983(InterPro) | |
| Mch1g1019 | 213 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 45 | 188 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch1g1019 | 213 | MobiDBLite | consensus disorder prediction | 171 | 213 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1019 | Mch-Chr1:13226753 | Mch2g1357 | Mch-Chr2:9653342 | 9.01E-42 | dispersed | |
| Mch1g1019 | Mch-Chr1:13226753 | Mch8g0679 | Mch-Chr8:4848301 | 6.02E-39 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42706 | PF00010 | HLH | 1.80E-06 | No_clan | Mch | TF |
Pathway information