Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1037 GGCCTTATGGTGCAGGCTGGCTTTGCTGGTGATGATGCTCCGAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACACACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCCTACGTTGGGGATGAAGCTCAATCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTTACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACCCAAATCATGTTCGAGACATTCAATGTGCCTGCCATGTATGTTGCCATCCAGGCCGTTCTCTCGCTCTATGCTAGTGGACGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTATGCCCTCCCTCATGCAATTCTCCGTTTGGACCTTGCTGGTCGTGACCTCACTGATGCTCTGATGAAGATTCTCACTGAAAGAGGTTACATGTTTACCACTACTGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTATGAACAAGAACTTGAGACTGCAAAG 654 48.17 GLMVQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAK 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13374934 13375675 + MC01g0724 Mch1g1037 675929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1037 218 FunFam Actin, alpha skeletal muscle 1 142 - -
Mch1g1037 218 ProSitePatterns Actins and actin-related proteins signature. 91 103 IPR020902 -
Mch1g1037 218 SUPERFAMILY Actin-like ATPase domain 3 140 IPR043129 -
Mch1g1037 218 SUPERFAMILY Actin-like ATPase domain 133 217 IPR043129 -
Mch1g1037 218 ProSitePatterns Actins signature 1. 40 50 IPR004001 -
Mch1g1037 218 PANTHER ACTIN 3 216 IPR004000 -
Mch1g1037 218 FunFam Actin, alpha skeletal muscle 21 58 - -
Mch1g1037 218 CDD NBD_sugar-kinase_HSP70_actin 61 168 - -
Mch1g1037 218 PRINTS Actin signature 102 115 IPR004000 -
Mch1g1037 218 PRINTS Actin signature 13 22 IPR004000 -
Mch1g1037 218 PRINTS Actin signature 127 146 IPR004000 -
Mch1g1037 218 PRINTS Actin signature 48 70 IPR004000 -
Mch1g1037 218 PRINTS Actin signature 36 47 IPR004000 -
Mch1g1037 218 SMART actin_3 3 218 IPR004000 -
Mch1g1037 218 Gene3D - 1 139 - -
Mch1g1037 218 Pfam Actin 3 213 IPR004000 -
Mch1g1037 218 Gene3D Actin; Chain A, domain 4 169 218 - -
Mch1g1037 218 Gene3D Actin; Chain A, domain 2 21 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1037 K10355 - - rcu:8264754 434.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1037 Mch-Chr1:13374934 Mch2g1792 Mch-Chr2:17032988 1.11E-153 dispersed
Mch1g1037 Mch-Chr1:13374934 Mch1g0721 Mch-Chr1:11115765 2.46E-150 transposed
Mch1g1037 Mch-Chr1:13374934 Mch2g0904 Mch-Chr2:6143104 2.46E-150 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT2G37620 96.8 3.2e-215 744.2
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT2G37620 96.3 4.6e-214 740.3
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 7.8e-214 739.6
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT2G37620 95.5 1.7e-213 738.4
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.7e-213 738.4
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-212 734.9
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT2G37620 96.3 4.3e-119 424.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT2G37620 94.4 2.8e-54 209.5
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 4.6e-214 740.3
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.0e-213 739.2
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.3e-213 738.8
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT5G59370 96.6 3.0e-213 737.6
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT5G59370 96.6 6.6e-213 736.5
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT5G59370 95.8 3.6e-118 421.8
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT5G59370 93.5 5.3e-53 205.3
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 2.1e-214 741.5
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 6.0e-214 740.0
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT3G46520 96.8 1.3e-213 738.8
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT3G46520 96.6 3.0e-213 737.6
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT3G46520 96.3 1.9e-212 734.9
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT3G46520 96.3 1.2e-118 423.3
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT3G46520 93.5 5.3e-53 205.3
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT3G12110 97.4 1.1e-215 745.7
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT3G12110 96.8 5.4e-215 743.4
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT3G12110 96.6 2.1e-214 741.5
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT3G12110 96.6 3.5e-214 740.7
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT3G12110 96.6 1.0e-213 739.2
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT3G12110 95.5 6.6e-213 736.5
Mch1g1037 . 3 217 Cytoskeleton Gene Families AT3G12110 96.3 6.2e-118 421.0
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT3G12110 96.3 2.5e-55 213.0
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-209 724.2
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 7.6e-209 723.0
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT3G18780 91.8 8.4e-208 719.5
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT3G18780 92.1 1.1e-207 719.2
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT3G18780 91.8 1.9e-207 718.4
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT3G18780 92.6 1.7e-115 412.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT3G18780 95.4 2.2e-54 209.9
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 2.6e-209 724.5
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 7.6e-209 723.0
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT1G49240 92.1 2.9e-208 721.1
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT1G49240 91.8 2.4e-207 718.0
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT1G49240 91.5 4.2e-207 717.2
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT1G49240 92.6 1.7e-115 412.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT1G49240 95.4 2.2e-54 209.9
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT5G09810 98.4 5.8e-217 750.0
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 2.7e-214 741.1
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 5.1e-213 736.9
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 6.6e-213 736.5
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 1.1e-212 735.7
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT5G09810 95.2 2.8e-211 731.1
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-120 429.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT5G09810 98.1 1.1e-55 214.2
Mch8g3187 . 1 134 Cytoskeleton Gene Families AT2G19760 76.9 8.0e-57 216.5
Mch9g0297 . 1 132 Cytoskeleton Gene Families AT2G19760 72.7 2.2e-54 208.4
Mch8g1219 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 1.1e-53 206.1
Mch8g3187 . 1 134 Cytoskeleton Gene Families AT4G29350 76.1 3.1e-56 214.5
Mch9g0297 . 1 132 Cytoskeleton Gene Families AT4G29350 74.2 9.8e-55 209.5
Mch8g1219 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 1.2e-52 202.6
Mch8g3187 . 1 134 Cytoskeleton Gene Families AT4G29340 85.2 8.2e-65 243.0
Mch9g0297 . 1 132 Cytoskeleton Gene Families AT4G29340 73.3 9.1e-56 213.0
Mch8g1219 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 2.1e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276