Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1037 GGCCTTATGGTGCAGGCTGGCTTTGCTGGTGATGATGCTCCGAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACACACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCCTACGTTGGGGATGAAGCTCAATCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTTACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACCCAAATCATGTTCGAGACATTCAATGTGCCTGCCATGTATGTTGCCATCCAGGCCGTTCTCTCGCTCTATGCTAGTGGACGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTATGCCCTCCCTCATGCAATTCTCCGTTTGGACCTTGCTGGTCGTGACCTCACTGATGCTCTGATGAAGATTCTCACTGAAAGAGGTTACATGTTTACCACTACTGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTATGAACAAGAACTTGAGACTGCAAAG 654 48.17 GLMVQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAK 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13374934 13375675 + MC01g0724 Mch1g1037 675929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1037 218 FunFam Actin, alpha skeletal muscle 1 142 - -
Mch1g1037 218 ProSitePatterns Actins and actin-related proteins signature. 91 103 IPR020902 -
Mch1g1037 218 SUPERFAMILY Actin-like ATPase domain 3 140 IPR043129 -
Mch1g1037 218 SUPERFAMILY Actin-like ATPase domain 133 217 IPR043129 -
Mch1g1037 218 ProSitePatterns Actins signature 1. 40 50 IPR004001 -
Mch1g1037 218 PANTHER ACTIN 3 216 IPR004000 -
Mch1g1037 218 FunFam Actin, alpha skeletal muscle 21 58 - -
Mch1g1037 218 CDD NBD_sugar-kinase_HSP70_actin 61 168 - -
Mch1g1037 218 PRINTS Actin signature 102 115 IPR004000 -
Mch1g1037 218 PRINTS Actin signature 13 22 IPR004000 -
Mch1g1037 218 PRINTS Actin signature 127 146 IPR004000 -
Mch1g1037 218 PRINTS Actin signature 48 70 IPR004000 -
Mch1g1037 218 PRINTS Actin signature 36 47 IPR004000 -
Mch1g1037 218 SMART actin_3 3 218 IPR004000 -
Mch1g1037 218 Gene3D - 1 139 - -
Mch1g1037 218 Pfam Actin 3 213 IPR004000 -
Mch1g1037 218 Gene3D Actin; Chain A, domain 4 169 218 - -
Mch1g1037 218 Gene3D Actin; Chain A, domain 2 21 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1037 Mch-Chr1:13374934 Mch2g1792 Mch-Chr2:17032988 1.11E-153 dispersed
Mch1g1037 Mch-Chr1:13374934 Mch1g0721 Mch-Chr1:11115765 2.46E-150 transposed
Mch1g1037 Mch-Chr1:13374934 Mch2g0904 Mch-Chr2:6143104 2.46E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1037 K10355 - rcu:8264754 434.106