Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g1038 | ATCACCATCGGAGCTGAGAGATTCCGTTGCCCAGAAGTTTTATTCCAGCCATCGCTCATCGGCATGGAAGCTGCTGGAATCCATGAAACAACCTACAACTCCATCATGAAGTGTGACGTAGATATCAGAAAGGATCTTTATGGAAACATCGTTCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGAATGAGCAAGGAAATCACAGCCCTTGCTCCTAGCAGCATGAAGATCAAGGTTGTTGCTCCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCCATTCTTGCATCTCTAAGCACCTTCCAGCAGGTAAATTTT | 330 | 46.36 | ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVNF | 110 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13375724 | 13376053 | + | MC01g0725 | Mch1g1038 | 675930 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g1038 | 110 | SUPERFAMILY | Actin-like ATPase domain | 1 | 108 | IPR043129 | - | |
| Mch1g1038 | 110 | Gene3D | - | 92 | 108 | - | - | |
| Mch1g1038 | 110 | FunFam | Major actin | 12 | 91 | - | - | |
| Mch1g1038 | 110 | Gene3D | - | 25 | 91 | - | - | |
| Mch1g1038 | 110 | PANTHER | ACTIN | 1 | 105 | IPR004000 | - | |
| Mch1g1038 | 110 | Gene3D | Actin; Chain A, domain 4 | 1 | 24 | - | - | |
| Mch1g1038 | 110 | Pfam | Actin | 1 | 108 | IPR004000 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1038 | Mch-Chr1:13375724 | Mch2g1792 | Mch-Chr2:17032988 | 5.45E-71 | dispersed | |
| Mch1g1038 | Mch-Chr1:13375724 | Mch1g0721 | Mch-Chr1:11115765 | 1.09E-70 | transposed | |
| Mch1g1038 | Mch-Chr1:13375724 | Mch2g0904 | Mch-Chr2:6143104 | 1.09E-70 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch1g1038 | K10355 | - | rcu:8264754 | 214.927 |