Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1050 ATGGACACCGCTGGTAGACTCATCGCCGGGTCTCACAATAGAAATGAGTTTGTTCTGATCAATGCAGATGAGACTGCACGGATCAAGTCTGTGAAGGAATTGAGTGGGCAAATATGTCAGATTTGCGGAGATGAGGTAGAGATAACTGTTGAAGGAGAGCTCTTTGTTGCCTGTAATGAGTGTGCTTTCCCAGTTTGTAGACCTTGCTACGAGTATGAGAGAAGAGAGGGAAATCAAGCTTGTCCACAGTGTAAAACCAGATACAAACGCATTAAGGGTAGTCCTAGAGTTGAAGGTGATGAGGATGAAGATGATATTGATGATTTGGATAATGAGTTCGACTATGGAAACCTCGATTCTTTGGGCCCTCATTATGCTGCAGAGGCAGCATTTGCTTCACGCCTTAATGCTGGCCGTGGTTCCCACCCTAATGCATCTCAAATCCCTGGACAGTCAGAGCACGAACCTTCTCCTCTTGGTTCCGAGATTCCTCTCCTGACATATGGCGAGGAGGATTATGAGATTTCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGGTCATGGAAACAGAGTCCATCCAATGCCATTCCCTGATCCATCTATACCCTCTCAACCTAGACCAATGGTTCCCCAAAAAGACATTGCAGTGTACGGTTACGGGAGTGTGGCATGGAAGGACAGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAGCATCAAGGGGCCGATGATGATGGAAATGATATTGACGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAGCCGCTATCAAGGAAATTGCCCATCGCCTCAAGCAGAATAAATCCATACAGATTAATCATCTTGCTTCGTCTTGTTATTCTTGGCTTATTCTTCCATTACAGAATTCTTCATCCAGTTAAAGATGCCTATGGTTTGTGGTTGACTTCAGTCATATGTGAAATATGGTTTGCTGTATCATGGATTCTGGATCAGTTCCCAAAATGGTATCCAATTGAAAGGGAGACTTATCTTGATAGGCTGTCACTGAGGTATGAAAAAGAAGGGAAGCCTTCTGAATTAGCCAGCGTGGACATATTTGTCAGTACTGTCGATCCATTGAAAGAACCTCCATTGATCACTGCAAACACAGTACTTTCCATTCTTGCAGTTGACTATCCGGTAGATAAAGTTGCATGCTATGTATCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCTAGGAAATGGGTCCCTTTCTGTAAGAAATTCAATATTGAGCCCCGTGCCCCTGAATTTTATTTCTCTCAAAAGATTGATTATTTGAAGAACAAGGTCCACCCTGCATTTGTCAGGGAAAGGCGAGCAATGAAGAGAGAATATGAAGAATTTAAGGTTAGGATAAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCTGAGGATGGCTGGACGATGCAAGATGGTACTCCATGGCCTGGGAACAATGTTCGAGACCACCCTGGCATGATTCAGGTCTTCCTTGGCCAGAGTGGAGTTTGCGATGTTGAAGGAAATGAGCTACCGCGTTTGGTTTATGTTTCTCGTGAAAAGCGGCCAGGGTTTGAACATCACAAGAAGGCTGGGGCCATGAATGCACTGGTTCGGGTCTCGGCAATTCTGTCTAATGCTCCTTATCTTCTTAATGTTGACTGTGATCACTACATTAACAATAGTAAGGCGCTTAGAGAAGCTATGTGTTTCATGATGGACCCTACATCAGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATTGATCGTCACGATCGGTATTCCAATCGGAATGTCGTTTTCTTTGATATTAACATGAAAGGATTAGATGGGCTACAAGGGCCAATATATGTTGGTACAGGATGTGTTTTCCGGAGGGTTGCCCTTTATGGATATGATGCTCCTACCAAGAAGAAACCCCCAAGCAAAACATGCAATTGCTTGCCAAAATGGTGTTGTCTTTGTTGTGGGTCTAGAAGGACCAAGAAGGGAAAGGCCAAGAATGAGAAGAAGAAGAAGACAAAGCACAGAGAAGCATCGAAGCAGATCCATGCACTTGAGAATATCGAGGAGGGAATTGAAGAACTAAGCATAGAGAAGTTGAATGTGTCTCAAATAAAATTGGCAAAAAAATTCGGGCAATCTCCCGTGTTTGTGAGCTCGACCCTGTTGGAAAATGGAGGAGTTCCTCATGATGTGAGTGCTGCATCACTCCTAAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTGGGGTGGATTTACGGTTCGGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCACGGCTGGCGGTCTGTGTACTGTATTCCTAAGAGACCTGCATTTAAAGGATCGGCTCCTATCAACCTCTCAGATCGTTTACACCAAGTTTTGCGGTGGGCTTTAGGATCTGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTACGGCTATGGAGGCGGGTTGAAATGGTTGGAGCGTTTTTCGTACATAAACTCCGTGGTCTATCCTTGGACCTCGATTCCATTGCTTGTTTACTGTAGTCTACCAGCTATCTGTCTCCTCACTGGAAAATTTATCGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCGATTGCTGCGACCGGTATCCTTGAGATGCAGTGGGGTGGTGTTGGAATTGACGACTGGTGGAGAAACGAGCAGTTCTGGGTAATTGGAGGCGTTTCGTCGCATCTTTTTGCTCTCTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTTAGCACCAACTTCACAGTGACATCCAAAGCAGCCGACGATGGGGAATTTTCAGAACTCTATGTCTTCAAGTGGACATCATTGTTAATACCCCCCACAACCTTGTTGATCATAAACATTGTCGGTGTAATTGTCGGGATCTCGGACGCCATCAATAATGGGTACGACTCCTGGGGTCCTCTCTTCGGAAGGCTATTTTTTGCCCTTTGGGTGATTATCCACCTCTACCCCTTCTTGAAGGGATTGTTAGGGAAACAAGATCGGTTACCGACGATCATTGTTGTCTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTGTGGGTAAGGATCAACCCGTTTGTATCGAAAGACGGTCCTGTTTTAGAAGTTTGCGGGTTGAATTGCGATTAG 3279 44.16 MDTAGRLIAGSHNRNEFVLINADETARIKSVKELSGQICQICGDEVEITVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNLDSLGPHYAAEAAFASRLNAGRGSHPNASQIPGQSEHEPSPLGSEIPLLTYGEEDYEISSDQHALVPHFMGHGNRVHPMPFPDPSIPSQPRPMVPQKDIAVYGYGSVAWKDRMEDWKKKQNDKLQVVKHQGADDDGNDIDDPDLPMMDEARQPLSRKLPIASSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAILSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPTKKKPPSKTCNCLPKWCCLCCGSRRTKKGKAKNEKKKKTKHREASKQIHALENIEEGIEELSIEKLNVSQIKLAKKFGQSPVFVSSTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYVFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13468225 13475238 + MC01g0730 Mch1g1050 675942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1050 1092 FunFam Cellulose synthase 21 112 - -
Mch1g1050 1092 Pfam Cellulose synthase 365 1080 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Mch1g1050 1092 SUPERFAMILY RING/U-box 25 111 - -
Mch1g1050 1092 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 521 657 IPR029044 -
Mch1g1050 1092 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 274 1061 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Mch1g1050 1092 SUPERFAMILY Nucleotide-diphospho-sugar transferases 379 910 IPR029044 -
Mch1g1050 1092 MobiDBLite consensus disorder prediction 137 163 - -
Mch1g1050 1092 MobiDBLite consensus disorder prediction 139 154 - -
Mch1g1050 1092 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Mch1g1050 1092 CDD mRING-HC-C4C4_CesA 37 87 - -
Mch1g1050 1092 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Mch1g1050 1092 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Mch1g1050 1092 FunFam Cellulose synthase 482 656 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1674 Mch-Chr11:15496482 Mch1g1050 Mch-Chr1:13468225 0 dispersed
Mch1g1050 Mch-Chr1:13468225 Mch6g0609 Mch-Chr6:4143842 0 dispersed
Mch1g1050 Mch-Chr1:13468225 Mch7g0996 Mch-Chr7:14172660 4.15E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1050 K10999 - csv:101211094 2104.72