Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1066 ATGATACCCTTATTCCCATCTTCTTCAAAATCTTTCCTCTGCTTCTCCCTCTTCTTCCTCTCTCTCACTCTTCTCTCCCCCTCTGCTTCCCCTGCTTCTCCATCTTCTTCCCACAGAGATACCCAGCAGCTGATTTCCTTCAAATCTTCACTTCCGAACCCGTCCCTCCTCCAAAACTGGCTCCCCAACGCCGACCCGTGTTCATTTTCCGGCATTATCTGTAAGGAAACCAGAGTCTCCGCCATCAATTTGAACTCCGTCTCTCTGAGCTCTAATTTCACCCATGTCTTCCCTTTGCTCGCGGCTCTTGACCACCTCGAATCGCTCTCTCTCAAAGCCACTAACCTCACTGGCTCCATTTCTCTGCCCTCTGGATTCAAGTGTGGCCCTCTTCTCTCCGACGTAGATCTGTCCCTCAATGCCCTCTTTGGCTCTGTTTATGATGTTTCTAATTTGGGGTTTTGCCCCAATGTCAAGAAACTTAATATCTCCTACAACACCTTGGATTTTCCTCCAAAAGACCCGTCTCCCGGATTCAAGCTTGATTTGGAGGTTCTCGATCTTTCTTCCAACCGGATGGTTGGGCCCAAGCCGGTTTCCTGGGTTTTCTCCGGCGGGTGTACTAATTTGCGGCACTTGGCATTGAAGGGAAACAAAATTAGCGGCGAGATTAATTTTTCGTCGTGTAGTAAACTCGAACATTTGGATATCTCTGGGAACAATTTCTCGGTGGGTGTTCCGTCGTTCGGTGATTGCTCTGCTTTGGAATACCTTGATATCTCAGGCAACAAGTTCACCGGCGACGTCGGACGTGCTCTGTCTCCTTGTTTGCAACTCAGCTTCCTCAATATCTCCGGTAACCAGTTCACAGGTCCAATCCCTTCGTTTGCATCTTCGAATTTGTGGTTTCTGTCGCTCGCGAACAACGATTTTCAAGGGGAGATTCCTGTAAGTATTGCGGATTTGTGTTCTAGTTTGGTAAATCTGGATCTTTCTTCTAATAGCTTGATTGGGGCTGTTCCTGCTGCTTTGGGGTCTTGTGCTTCGTTGGAATCTTTGGACATTTCGAAAAATAACTTGTCCGGTGAGTTCCCCATTGCCATTTTTGCTAAAATGAGCAGCCTCAAGAGACTCTCTGTCTCGGGTAACAAATTTTTTGGTGTCTTGTCGGATTCTCTGTCTCAGCTTGCCTTTTTGAACTCCTTGGATCTGAGTTCCAATAACTTTACTGGGTCGATTCCGGCGGGGCTGTGTAAAGACCCTAATAACAGCTTGAAGGAATTGTTTCTTCAGAACAATTGGCTGACTGGTCCAATCCCTGCTACTCTTAGCAACTGTTCTCAGCTGGTTTCTCTTGATTTGAGCTTCAACTTTCTGAGCGGGACGATCCCGTCAAGCTTGGGATCGCTTTCGAATCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAGGGGGAGATTCCACCGGATTTTAAGAACTTCCGGGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTCACCGGGACGATTCCTTCTGGGTTGAGCAACTGCACCAACTTGAACTGGATTTCATTGTCGAACAACCGGCTGAGTGGAGAGATTCCGTCCTGGATTGGGCAGCTGCCTAACCTTGCCATTCTTAAGCTCAGTAACAACTCGTTCTACGGTACGATTCCTGTCGAGTTGGGCGATTGTCGAAGCTTGATCTGGCTCGACCTCAATACCAATTTATTGAATGGAACGATCCCTCCAGAGCTGTTCCGTCAATCGGGTAACATTGCCGTTAACTTCATCACCGGGAAGTCGTATGCTTACATTAAGAATGATGGAAGCAAGCAGTGTCATGGAGCTGGAAATTTGCTCGAGTTTGCTGGGATCAGACAGGAACAAGTGAACAGGATTTCAAGCAAGAGTCCCTGCAACTTCACCAGAGTTTACAAAGGCATGACTCAGCCGACGTTTAATCATAACGGGTCGATGATCTTTCTTGATCTTTCGCACAATATGTTGTCTGGTAGGATTCCTAAGGAGATTGGTTCTACCAACTATCTCTACATATTGAATTTGGGGCATAACAGTCTCTCCGGAGCCATTCCGCAAGAGATCGGTGACTTGACGAAACTTAACATTCTTGATCTCTCAAGCAATGAGTTTGAAGGATCAATTCCATTGTCTTTGACTCGACTTTCCTCCCTCATGGAGATTGATCTGTCTAACAATCACCTCAACGGTACAATACCCGAATCAGCTCAGTTCGAAACGTTCCCGGCATCTGGTTTTGCAAATAATTCAGGCCTCTGTGGGTATCCTCTCCCTCCATGTGGGGTTGATTCAGGAGCAAATGCAAATGCTCAGCACCAAAGATCTCACAGGAAACAGGCATCGCTCGCGGGCAGTGTGGCGATGGGGCTACTCTTCTCCCTCTTCTGTATATTCGGTCTAATTATAGTAATTATTGAGATGAGGAAGAGAAGGAAAAAGAAGGATTCTACTCTTGATGCCTATGTTGAGAGTCATTCCCAATCAGGCACAACGACTGCCGTTAACTGGAAGCTCAGCGCTCGCGAAGCGTTGAGCATCAATCTTGCAACATTTGAGAAGCCACTTCGGAGGCTTACATTTGCAGACCTTCTAGAGGCGACTAGTGGCTTCCACAACGACAGCCTGATTGGTTCCGGGGGTTTTGGCGATGTGTACAAGGCTCAATTGAAGGATGGAAGCATCGTAGCGATCAAGAAGCTAATTCATATCAGTGGACAGGGCGATCGGGAGTTCACTGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACCTGGTCCCGCTTCTGGGCTACTGCAAAGTTGGAGAAGAGCGGCTTCTGGTGTACGAGTACATGAAGTACGGAAGCTTGGAAGACGTTTTACACGACCAGAAGAAATCCGGGATCAAACTGAATTGGGCTACAAGAAGGAAGATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCACAGGGACATGAAATCAAGCAATGTGTTGTTGGATGAGAACTTGGAAGCCAGAGTCTCAGATTTTGGAATGGCAAGACTCATGAGTGCCATGGACACCCATTTGAGTGTCAGCACATTAGCCGGGACGCCCGGTTACGTCCCTCCCGAATATTACCAGAGCTTCCGCTGTTCCACAAAAGGCGATGTTTACAGTTACGGTGTCGTCATGCTCGAGCTCTTAACAGGAAAGCGACCCACAGACTCCGCTGATTTCGGGGACAACAATCTCGTCGGGTGGGTAAAACAGCACGCCAAGTTGAAAATAACCGACGTTTTCGATCCCGAGCTCATGAAAGAGGACCCAAGCCTCGAGATCGAGCTATTACAACACTTGAAGGTTGCTTGTGCTTGCTTAGACGATAGGTCGTGGCGGCGCCCGACAATGATCCAGGTGATGACGATGTTCAAGGAAATCCAAGCGGGGTCAGGGATGGATTCGCAATCTACGATTGGAACGGACGACGGAGGATTCAGCATGGACATGGTAGACATGAGCTTAAAGGAAGTACCAGAA 3579 47.69 MIPLFPSSSKSFLCFSLFFLSLTLLSPSASPASPSSSHRDTQQLISFKSSLPNPSLLQNWLPNADPCSFSGIICKETRVSAINLNSVSLSSNFTHVFPLLAALDHLESLSLKATNLTGSISLPSGFKCGPLLSDVDLSLNALFGSVYDVSNLGFCPNVKKLNISYNTLDFPPKDPSPGFKLDLEVLDLSSNRMVGPKPVSWVFSGGCTNLRHLALKGNKISGEINFSSCSKLEHLDISGNNFSVGVPSFGDCSALEYLDISGNKFTGDVGRALSPCLQLSFLNISGNQFTGPIPSFASSNLWFLSLANNDFQGEIPVSIADLCSSLVNLDLSSNSLIGAVPAALGSCASLESLDISKNNLSGEFPIAIFAKMSSLKRLSVSGNKFFGVLSDSLSQLAFLNSLDLSSNNFTGSIPAGLCKDPNNSLKELFLQNNWLTGPIPATLSNCSQLVSLDLSFNFLSGTIPSSLGSLSNLKNLIMWLNQLEGEIPPDFKNFRGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPSWIGQLPNLAILKLSNNSFYGTIPVELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGRIPKEIGSTNYLYILNLGHNSLSGAIPQEIGDLTKLNILDLSSNEFEGSIPLSLTRLSSLMEIDLSNNHLNGTIPESAQFETFPASGFANNSGLCGYPLPPCGVDSGANANAQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVIIEMRKRRKKKDSTLDAYVESHSQSGTTTAVNWKLSAREALSINLATFEKPLRRLTFADLLEATSGFHNDSLIGSGGFGDVYKAQLKDGSIVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKSGIKLNWATRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLKITDVFDPELMKEDPSLEIELLQHLKVACACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGTDDGGFSMDMVDMSLKEVPE 1193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13609815 13613393 + MC01g0746 Mch1g1066 675958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1066 1193 SMART serkin_6 885 1157 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1066 1193 Gene3D Transferase(Phosphotransferase) domain 1 961 1162 - -
Mch1g1066 1193 Pfam Leucine Rich repeat 207 223 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 SMART LRR_typ_2 494 518 IPR003591 -
Mch1g1066 1193 SMART LRR_typ_2 542 566 IPR003591 -
Mch1g1066 1193 SMART LRR_typ_2 396 420 IPR003591 -
Mch1g1066 1193 SMART LRR_typ_2 470 493 IPR003591 -
Mch1g1066 1193 SMART LRR_typ_2 372 395 IPR003591 -
Mch1g1066 1193 SMART LRR_typ_2 567 590 IPR003591 -
Mch1g1066 1193 SMART LRR_typ_2 730 753 IPR003591 -
Mch1g1066 1193 SUPERFAMILY Protein kinase-like (PK-like) 871 1161 IPR011009 -
Mch1g1066 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 178 421 - -
Mch1g1066 1193 Pfam Leucine Rich Repeat 685 706 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 663 681 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 732 750 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 424 446 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 279 296 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 399 418 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 708 730 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 325 347 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 349 368 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 Pfam Leucine Rich Repeat 231 251 IPR001611 GO:0005515(InterPro)
Mch1g1066 1193 SUPERFAMILY RNI-like 273 586 - -
Mch1g1066 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 422 597 - -
Mch1g1066 1193 SUPERFAMILY L domain-like 38 296 - -
Mch1g1066 1193 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 653 1160 IPR050647 -
Mch1g1066 1193 Gene3D Phosphorylase Kinase; domain 1 845 960 - -
Mch1g1066 1193 FunFam Brassinosteroid LRR receptor kinase 961 1162 - -
Mch1g1066 1193 Pfam Leucine rich repeat N-terminal domain 39 74 IPR013210 -
Mch1g1066 1193 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 653 774 - -
Mch1g1066 1193 FunFam Serine/threonine-protein kinase BRI1-like 1 599 656 - -
Mch1g1066 1193 FunFam serine/threonine-protein kinase BRI1-like 2 847 960 - -
Mch1g1066 1193 Gene3D Ribonuclease Inhibitor 44 775 IPR032675 -
Mch1g1066 1193 Gene3D - 597 657 - -
Mch1g1066 1193 ProSitePatterns Protein kinases ATP-binding region signature. 891 914 IPR017441 GO:0005524(InterPro)
Mch1g1066 1193 Pfam Protein kinase domain 885 1154 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1066 1193 ProSiteProfiles Protein kinase domain profile. 885 1160 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1066 1193 Pfam Brassinosteroid receptor island domain 592 656 IPR045381 -
Mch1g1066 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1007 1019 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1066 1193 CDD STKc_IRAK 891 1160 - -
Mch1g1066 1193 SUPERFAMILY L domain-like 652 775 - -
Mch1g1066 1193 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1066 Mch-Chr1:13609815 Mch4g1482 Mch-Chr4:18330583 5.81E-166 dispersed
Mch4g1899 Mch-Chr4:21649553 Mch1g1066 Mch-Chr1:13609815 1.68E-48 dispersed
Mch6g0098 Mch-Chr6:601331 Mch1g1066 Mch-Chr1:13609815 9.65E-60 dispersed
Mch6g0263 Mch-Chr6:1727684 Mch1g1066 Mch-Chr1:13609815 2.56E-60 dispersed
Mch1g1066 Mch-Chr1:13609815 Mch9g0491 Mch-Chr9:3621434 9.42E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77121 PF00069 Pkinase 1.60E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1066 K13415 - csv:101209118 2088.54