Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g1067 | ATGGGATCGGCTTCGGAGGAGATGGCGAATCAGTTGCTGAGCCTATTCCAACCCCAACAACATCAATCATCTGATCTTACTCTTACACAAATGGGTTTCTTCTCTCTCCCCCAAAACTCCGCCGCCGCCGCTGAAGAAGCCGGCCTCGATCTCTTCTCTCTCAACCCCCGCCAGCAACACCATCTCCATTACTTAGCTTCTGCCTTCGCCGGCGCCGCCACCTCCACAACCACGCTCCCATCATCTCCCTCCTCTCTCTGGGATAGGGATAGGGATGTGGATGTGGATGTGGGGAGAGGGAAAAATAATGGCGGTGGAGATGGCGGCGGCGGCTGCAGAGCGATGAAGATGAAGCGGATAAAAGGGAGGAAGAAAGTGAGAGAGCCCAGATTCTGCTTCAAAACCATGAGCGACGTCGACGTTCTTGACGACGGTTACAAATGGAGAAAGTACGGCCAGAAAGTTGTCAAGAACACCCTCCATCCCAGGAGCTACTACCGGTGCACAGAAGATAAGTGTAGGGTGAAGAAGAGGGTCGAGAGATTAGCGGAAGATCCGAGAATGGTGATAACGACCTACGAAGGACGACATGCCCATTCACCATCACGTGATAATTTGGAAGAGACGATGGGGCAGCTACCATCGGGCCACCTCAGCAATATCTTCTGGTAG | 672 | 53.12 | MGSASEEMANQLLSLFQPQQHQSSDLTLTQMGFFSLPQNSAAAAEEAGLDLFSLNPRQQHHLHYLASAFAGAATSTTTLPSSPSSLWDRDRDVDVDVGRGKNNGGGDGGGGCRAMKMKRIKGRKKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEDKCRVKKRVERLAEDPRMVITTYEGRHAHSPSRDNLEETMGQLPSGHLSNIFW | 223 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13626732 | 13628470 | - | MC01g0747 | Mch1g1067 | 675959 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g1067 | 223 | FunFam | WRKY transcription factor 57 | 128 | 202 | - | - | |
| Mch1g1067 | 223 | ProSiteProfiles | WRKY domain profile. | 137 | 202 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch1g1067 | 223 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 107 | 204 | IPR044810 | GO:0003700(InterPro) | |
| Mch1g1067 | 223 | SUPERFAMILY | WRKY DNA-binding domain | 134 | 201 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch1g1067 | 223 | Pfam | WRKY DNA -binding domain | 143 | 199 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch1g1067 | 223 | Gene3D | WRKY domain | 129 | 195 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch1g1067 | 223 | SMART | WRKY_cls | 142 | 201 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1067 | Mch-Chr1:13626732 | Mch2g1464 | Mch-Chr2:10872866 | 1.41E-57 | dispersed | |
| Mch1g1067 | Mch-Chr1:13626732 | Mch1g1999 | Mch-Chr1:19577315 | 6.61E-34 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42711 | PF03106 | WRKY | 1.60E-24 | CL0274 | Mch | TF |
Pathway information