Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1147 ATGGCGAACGAGTTTGGAGAATCAACAAGCGTGCCACATCAAAACCCCTTTTGTTCCATTAACAGTGACAGCAGCAGCAATGACACTGGTGATTTCGAATGCAATATTTGCTTCGAGTTAGCTCAAGATCCAATTATCACTCTTTGCGGCCATCTCTATTGCTGGCCCTGTCTGTATAGATGGCTGCACTATCACTCGCATTCCCAAGAATGTCCAGTTTGTAAGGCTGTTGTTCAGGAGGAGAAGTTGGTTCCCCTTTATGGTAGGGGAAAGATACCATCTGACCCAAGATTAACTAGATATCCCGGTATTGACGTTCCCAATCGCCCTGCTGGGCAAAGGCCTCAAACTGCACCTCCCCCTGTTGCCAATGACTTTGCAAACTACGGGTTTGGATTCACTGGTGGGTTTATGCCAATGGCAACAGCAAGGATTGGCAACTTCACTTTGGCTACTGCTTTTGGTGGGCTGATCCCATCTTTATTCAACATACAGTTTCATGGATTTCCTGATGCTACAGTTTATGGAACTACTTCTGGTTATCCCTATGCTTTCAATACATTCCATGGGGGTCATGGCCACCATTTTCCTCAACCGCCAATTCGAGGTCAGCATGCTGATAACGTACTGAAAAACCTCCTTTTGCTTGTTGGTGTCTTTGTAATTCTTGCCTTGCTTTGGTGGTAA 687 45.71 MANEFGESTSVPHQNPFCSINSDSSSNDTGDFECNICFELAQDPIITLCGHLYCWPCLYRWLHYHSHSQECPVCKAVVQEEKLVPLYGRGKIPSDPRLTRYPGIDVPNRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPPIRGQHADNVLKNLLLLVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13970955 13971842 + MC01g0805 Mch1g1147 676039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1147 228 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 IPR018957 GO:0046872(InterPro)
Mch1g1147 228 CDD RING-HC_AtRMA-like 32 76 - -
Mch1g1147 228 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 18 88 - -
Mch1g1147 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Mch1g1147 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Mch1g1147 228 SUPERFAMILY RING/U-box 29 87 - -
Mch1g1147 228 SMART ring_2 34 74 IPR001841 -
Mch1g1147 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 23 220 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Mch1g1147 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 91 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1147 Mch-Chr1:13970955 Mch5g1449 Mch-Chr5:15565304 1.25E-27 dispersed
Mch1g1147 Mch-Chr1:13970955 Mch8g0744 Mch-Chr8:5264089 5.70E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1147 K10666 - csv:101205026 424.476